NTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCAGTATTTACTTCGTTCCTCATTTCTCTCTTCGTCACCTGCAA
CATCTTATTTTATGGGCATGCTAAGCACATTTTTACCTCTGTATAGAGTG
TCGACTCTATTTGCAAAATATAGATTCCTCTTTCTATATCTAGCTTTGAG
ATGTCCCAGGAAACTTTTCTTTCCAATTCCTCTCTCTATCACATCCTGGT
TGCAGTTATGTTTGAATATTGCTATACTCGTGTTTCCCATAAATGCCTTT
GCATGCTTCAAATAGAAATAATAGTTTGCTTTTCCTCTCCACTAGATAAC
ATATATCTCTAAGGCAAGATGCTCATTTGTTATTTTTTTAAAAATTTCAA
TCACTGACATTAATAAAAGAGAGCAATGCTCTTGTCTAATGCTCAGTAAA
TAATATGAATGAAAGATTTTTTTTAAAAAATAAAAGCAATTCTTTAAAAT
ACTAAAATACCCAGAAAAAATAGATTATCAGTATCCCAAGGATTAATTGC
TGATTCAGGGTCTCTAATTTCTTTCTCTATACATGGTGTACCAGTAGAAT
TTGTAGATATTTGGTTATAGTATTGATCATGAAGTACTCACTACTCTTGA
GAAAAAATGATAAGAAAGAAGGGAAGGAAGTAAGAACGAACGTAAGGAAG
GTAGAGAGAGAGATAATATATATCTTNCTTCTAACCCCTTTATAGTTCTA
TTTTTT

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCCAAGGAATACTGAATGGC
AGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGC
AAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAG
ATCAAAAATTCAGGTGACAGCAGATGCTGGTGAGGATGTGGAGAAAGAGG
AACGCTCCTCCATTGTTGGTGGAATTGCAAGCTTATACAACTACTCTGGA
AATCAGTCTGGCAGTTCCTCATAATATTGGACATAGTACTACCGGAGGAT
CCAGCAATACCTCTCCTGGGCATATATCCAAAAGATGTCCAACTGGTAAG
AAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGANATTCCTAGGCAAATGGATGGACCGGGAGGGCATCATCCTGAG
TGAGGTAACCCAATCACAAAGGAACTCTCACAATATGTACTCACTGATAA
GTGGATATTAGCCCAGAAACTTAGCATACCCAAGATATAAGATTACATTT
ACTAAACTCTTTAAACTCCAGAGAACGAAGACCTAAGTGTGGACACTTTT
GCCCCTTCT

Query= MSMg01no441_g16.b1 MSMg01no441_g16.b1 CHROMAT_FILE:
MSMg01no441_g16.b1 PHD_FILE: MSMg01no441_g16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:11 2005
         (540 letters)



>mm_chr1_4164304_4165243
          Length = 940

 Score =  917 bits (474), Expect = 0.0
 Identities = 521/538 (96%), Gaps = 4/538 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccagtatttacttcgttcctcatttctctcttcgtcacctgcaacatcttatttt 64
           ||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gaattccagaatcaacttcgttcctcatttctctcttcgtcacctgcaacatcttatttt 681

                                                                       
Query: 65  atgggcatgctaagcacatttttacctctgtatagagtgtcgactctatttgcaaaatat 124
           |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 680 atgggcatgctaagcacatttttacccctgtatagagtgttgactctatttgcaaaatat 621

                                                                       
Query: 125 agattcctctttctatatctagctttgagatgtcccaggaaacttttctttccaattcct 184
           ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct: 620 agattcctctttctatatctagctttgagatgtcccaggaaacttctctttccaattctt 561

                                                                       
Query: 185 ctctctatcacatcctggttgcagttatgtttgaatattgctatactcgtgtttcccata 244
           |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct: 560 ctctctatcacatcctggttgcagctatgtttgaatattgctatacttgtgtttcccata 501

                                                                       
Query: 245 aatgcctttgcatgcttcaaatagaaataatagtttgcttttcctctccactagataaca 304
           ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 500 aattcctttgcatgcttcaaatagaaataatagtttgcttttcttctccactagataaca 441

                                                                       
Query: 305 tatatctctaaggcaagatgctcatttgttatttttttaaaaa--tttcaatcactgaca 362
           |||||||||||||||||||||||||||||||||||||  ||||  |||||||||||||||
Sbjct: 440 tatatctctaaggcaagatgctcatttgttatttttt--aaaatttttcaatcactgaca 383

                                                                       
Query: 363 ttaataaaagagagcaatgctcttgtctaatgctcagtaaataatatgaatgaaagattt 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ttaataaaagagagcaatgctcttgtctaatgctcagtaaataatatgaatgaaagattt 323

                                                                       
Query: 423 tttttaaaaaataaaagcaattctttaaaatactaaaatacccagaaaaaatagattatc 482
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ttttttaaaaataaaagcaattctttaaaatactaaaatacccagaaaaaatagattatc 263

                                                                     
Query: 483 agtatcccaaggattaattgctgattcagggtctctaatttctttctctatacatggt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 262 agtatcccaaggattaattgctgattcagggtctctaatttctttctctctacatggt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)