Query= MSMg01no441_l10.b1 MSMg01no441_l10.b1 CHROMAT_FILE:
MSMg01no441_l10.b1 PHD_FILE: MSMg01no441_l10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:36 2005
(154 letters)
>mm_chr1_29369954_29370511
Length = 558
Score = 263 bits (136), Expect = 3e-75
Identities = 150/156 (96%), Gaps = 4/156 (2%)
Strand = Plus / Minus
Query: 1 aatataaat--cacacacacactccacactcacatatctacaaacacagtacataagtat 58
||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 356 aatataaatcacacacacacactcaacactcacatatctacaaacacactacataagtat 297
Query: 59 tg--atatatatatatatgtgtgggactctgaatttctctgcggttttatatttttgttt 116
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 tgatatatatatatatatgtgtgggactctgaatttctctgcggttttatatttttgttt 237
Query: 117 gtgtgagtgtatgtattatatgagtgtgagagaatg 152
||||||||||||||||||||||||||||||||||||
Sbjct: 236 gtgtgagtgtatgtattatatgagtgtgagagaatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 154
Length of database: 558
Length adjustment: 8
Effective length of query: 146
Effective length of database: 550
Effective search space: 80300
Effective search space used: 80300
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no441_l10.g1 MSMg01no441_l10.g1 CHROMAT_FILE:
MSMg01no441_l10.g1 PHD_FILE: MSMg01no441_l10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:36 2005
(598 letters)
>mm_chr1_29196812_29197809
Length = 998
Score = 919 bits (475), Expect = 0.0
Identities = 572/635 (90%), Gaps = 49/635 (7%)
Strand = Plus / Plus
Query: 1 atatgggcttatttttgtcatgaagaaagtgtggagaagagaagacaatctgttagaatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 atatgggcttatttttgtcatgaagaaagtgtggagaagagaagacaatctgttagaatc 235
Query: 61 aattctcttcttccaacatttttttaaccttcttccctattattcaatctttaagattgg 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 236 aattctcttcttccaacatttttttaaccttcttccctattatttaatctttaagattgg 295
Query: 121 aaagcattttattcttaaggtagatcacattactttttaagctacttatatattacctga 180
||||||||||||||||||||||||||||||||||| ||||||| | |||
Sbjct: 296 aaagcattttattcttaaggtagatcacattactt------------atatattgcttga 343
Query: 181 ataaccatatacatcattttaatgtagcatat------------------------acat 216
|||||| |||||||| ||||||||||||||| | ||
Sbjct: 344 ataaccttatacatcgctttaatgtagcatatgtatatatatatatatatatatatatat 403
Query: 217 acacatatgtgtgtgtacatatatatatatatata-------------aagttaatatat 263
|||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 404 acacatatgtgtgtgtacatttatatatatatatacatatatatatataagttaatatat 463
Query: 264 acttaatttttatttttatgtttcatttcatacaatacaaatgttttaatgatttgtcga 323
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 464 acttaatttttatttttatgtttcatttaatacaatacgaatgttttaatgatttgtcga 523
Query: 324 agttttcaattgtcatgtagcagtttcttttagaaagtcttggtgactaagttagcgttt 383
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 524 agttttcaattgtcatgtagcagtttcttttagaaagtcttggtgactaatttagtgttt 583
Query: 384 tcttattctattattttttcatcaatagagtaacccttgaatttagatttgtgtgttcat 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 tcttattctattattttttcatcaatagagtaacccttgaatttagatttgtgtgttcat 643
Query: 444 aattattacttttgtctcaaatcgtgcatgtgcatacagaatgttaacttactatagttt 503
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 644 aattattacttttgtctcaaatcatgcatgtgcatatagaatgttaacttactatagttt 703
Query: 504 ttctctaaattacatctgagcctctacagactacaaggtgagttaatatccattcttcct 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 ttctctaaattacatctgagcctctacagactacaaggtgagttaatatccattcttcct 763
Query: 564 ggacagatgatgggaagctagacacttacttggta 598
|||||||||||||||||||||||||||||||||||
Sbjct: 764 ggacagatgatgggaagctagacacttacttggta 798
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space: 580944
Effective search space used: 580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
