BAC Information

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BAC

Clone NameMSMg01-442B05
Chromosome1 (Build37)
Map Location 84,424,501 - 84,424,741
singlet/doubletsinglet
Overlap geneDner
Upstream gene5033414K04Rik, LOC100039638
Downstream geneTrip12, Fbxo36, Slc16a14, LOC100039695, EG665317, LOC100039723, A530032D15Rik, LOC100039742, LOC100040158, LOC621835, EG665378, C130026I21Rik, LOC100040135, LOC639868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-442B05.T7 (MSMg01no442_b05.b1)MSMg01-442B05.TJ (MSMg01no442_b05.g1)
ACCAG531807AG531808
length696788
length of high quality
(start - end)
237 (63 - 299)242 (88 - 329)
definitionCHROMAT_FILE: MSMg01no442_b05.b1 PHD_FILE: MSMg01no442_b05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:05 2005CHROMAT_FILE: MSMg01no442_b05.g1 PHD_FILE: MSMg01no442_b05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCCTCTTTTNNNCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCGCGGAATTCTTTGTTTAGTTCTGAGCCCTATTTTTTA
ATGGGGTTATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATAT
ATTGAATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCC
AATCTGTTGGTGGCCTTTTTGTCTTATTGACAGTGTCTTTTGCCTTACAG
AAGCTTTGCAGCTTTATGAGGTCCCATTTAGAAACCCTAGGAAAGAATTC
TGGAACCATAGATGCCAGCATCAGCAACAGATGGATGATAGAATCTCAGG
TGGAGAAGAAATCGGTTATTTCTCTATATCTGACCCCCACCGGGGGACCA
AAGGGGTAACCTGGGGGTTTTTTTTTTTTTTTCCAAAACCCTTGGAACCC
CTTTTTTTTTTTTGGGTGATAAAAAATTTTTTTTTTTTTCCTTCTTCCAT
AAAAAGTAACCTTTTTTTTTTTTTATCCCTATATATTTCCCTCTTTTTTT
TTCCCACCCTCCTTTTCTTTCTTTTATTTAAGCTGCGCCCTTTTTTTTTC
CCCCTCTTCCCTTTTCCTTTTTGTGCCGCCATTTTTTCCTCTTTTTTCTT
TATTTTTATTTCCCCCCTTTTTTTTTTTTTTTTTCTTTCCTCGCGT
CTAATCATACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGTGGAGCTGGG
GTCTGAGCAGCATGTCTTGGCCTGCTTGGCCTGGGCATATGGCTGCTGGA
TTGGGATGATCTTGCCAGGTTTCTTTCTTCCAGGCAGCACGAAGCACAAA
TCGCCCCCTTCTTCCCCCCAACACGACAGGAATGGATGAGTCGCTGGAAT
TTGTCACACAACGTGTGAGAGCCATCTGGCTACAACGGGAGCCTCAGAAT
TTTGGATCTTTCAGAGGGTGACAACGTGTTGGTTCGGGCAAGGAAGAGAA
CTAAGGAGTAAACAGTGTAGGCTGCAGCCTCTTCCACTGGGAGCTTGTGG
TGGCAGGAGAGGAGCTGGTTGTCCCAGGTCTTGTTGCTTCTTGCGCCTCA
TTATGTGCTCTGATGTACCACTCTCCCGGCCAGAGCCTATCATATCTGGC
GTTGGATCTACTGTTATTTCCCTCTCCTTGTTGCCTCGCCCCCCCCCCTT
TCTTGTAATATATCTCCCATCTCCTCTTTTTCACCCTTCTCTTTTTTTCC
CTCTTTCTACTTCCCTCTCACTTTTCTTCTCCCACCTTACTTTTATTTCC
CACCCCCATGTCTTCTTCTCTCTATCCCCTCTCACCTACTACACTCACTT
TCTTCCTCCTTCTGCTTCTATTTTTTCTATTCCCTCATTTTCTATTCCTT
TACTTTATATTTATCCTATCTCTCTTCATTCCCTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no442_b05.g1 MSMg01no442_b05.g1 CHROMAT_FILE:
MSMg01no442_b05.g1 PHD_FILE: MSMg01no442_b05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:05 2005
         (242 letters)



>mm_chr1_84424301_84424942
          Length = 642

 Score =  466 bits (241), Expect = e-136
 Identities = 241/241 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggtggagctggggtctgagcagcatgtcttggcctgcttggcctgggcatatggctgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggtggagctggggtctgagcagcatgtcttggcctgcttggcctgggcatatggctgct 382

                                                                       
Query: 61  ggattgggatgatcttgccaggtttctttcttccaggcagcacgaagcacaaatcgcccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggattgggatgatcttgccaggtttctttcttccaggcagcacgaagcacaaatcgcccc 322

                                                                       
Query: 121 cttcttccccccaacacgacaggaatggatgagtcgctggaatttgtcacacaacgtgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttcttccccccaacacgacaggaatggatgagtcgctggaatttgtcacacaacgtgtg 262

                                                                       
Query: 181 agagccatctggctacaacgggagcctcagaattttggatctttcagagggtgacaacgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagccatctggctacaacgggagcctcagaattttggatctttcagagggtgacaacgt 202

            
Query: 241 g 241
           |
Sbjct: 201 g 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)