Query= MSMg01no442_c03.b1 MSMg01no442_c03.b1 CHROMAT_FILE:
MSMg01no442_c03.b1 PHD_FILE: MSMg01no442_c03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:10 2005
(404 letters)
>mm_chr1_176256713_176257516
Length = 804
Score = 727 bits (376), Expect = 0.0
Identities = 394/400 (98%), Gaps = 1/400 (0%)
Strand = Plus / Minus
Query: 4 ggaattcccgatttgcctaaataagtgggtctctgattctgtgccttctcttcagctctt 63
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 ggaattcccga-gtgggtaaataagtgggtctctgattctgtgccttctcttcagctctt 701
Query: 64 ttccttctgtttgctctgtccaattccgatctgttcacttttgttttattatattgtgtt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 ttccttctgtttgctctgtccaattccgatctgttcacttttgttttattatattgtgtt 641
Query: 124 atattatattaattatactttattttattattaaaatgcaaaataataaaaccaatgttt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 atattatattaattatactttattttattattaaaatgcaaaataataaaaccaatgttt 581
Query: 184 ttactttgtaaacatttgctttctattatacatctttctattataagtattttcttttct 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 ttactttgtaaacatttgctttctattatacatctttctattataagtattttcttttct 521
Query: 244 tttgagctgccttggccatgaaccttctaatcccaggtaagagaagctatgtcctcttga 303
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 520 tttgagctgccttggccatgaaccttctaaccccaggtaagagaagctatgtcctcttga 461
Query: 304 agggatatagttcatattttgtgttaagaaaattgtggtagtctgtcatacagtatatct 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 460 agggatatagttcatattttgtgttaagaaaattgtggtagtctgtcatacagtagatct 401
Query: 364 tgagtgtctcccaaaggtccatatttgatgctattgtacg 403
||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tgagtgtctcccaaaggtccatatttgatgctattgtacg 361
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 804
Length adjustment: 9
Effective length of query: 395
Effective length of database: 795
Effective search space: 314025
Effective search space used: 314025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no442_c03.g1 MSMg01no442_c03.g1 CHROMAT_FILE:
MSMg01no442_c03.g1 PHD_FILE: MSMg01no442_c03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:10 2005
(342 letters)
>mm_chr1_176094653_176095394
Length = 742
Score = 630 bits (326), Expect = 0.0
Identities = 338/342 (98%)
Strand = Plus / Plus
Query: 1 ctaccattaatgttagcattctcactgttatgtaacagtatgtaactgctaataaaatac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaccattaatgttagcattctcactgttatgtaacagtatgtaactgctaataaaatac 260
Query: 61 acgtaagaatggttgtgccctctaaattctcctaaggatgtcctagagaagcagttgcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acgtaagaatggttgtgccctctaaattctcctaaggatgtcctagagaagcagttgcac 320
Query: 121 tagcctggcatgtgtggggctcacaaccaaacagtattaattacttttctattgctgtga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagcctggcatgtgtggggctcacaaccaaacagtattaattacttttctattgctgtga 380
Query: 181 caaaatgctatgactaaaacaactgctagatgagagagtttgtggtttatagttccaaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaaatgctatgactaaaacaactgctagatgagagagtttgtggtttatagttccaaag 440
Query: 241 ggttttattccatgatgaagaagcagaggcagtagttgccagtcatggcagctggagcag 300
|||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 ggttagagtccatgatgaagaagcagaggcagtagttgccagccatggcagctggagcag 500
Query: 301 taagcagggaattcacatcttaaaccacacacgtgaagcaga 342
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taagcagggaattcacatcttaaaccacacacgtgaagcaga 542
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space: 244089
Effective search space used: 244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
