BAC Information

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BAC

Clone NameMSMg01-442L05
Chromosome1 (Build37)
Map Location 49,676,310 - 49,676,555
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666903, LOC666909, 2900045O20Rik, LOC666924, C230029F24Rik, LOC627430, LOC100041981
Downstream geneEG666962, EG666970, LOC100041993
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-442L05.T7 (MSMg01no442_l05.b1)MSMg01-442L05.TJ (MSMg01no442_l05.g1)
ACCAG532283AG532284
length759777
length of high quality
(start - end)
376 (80 - 455)246 (80 - 325)
definitionCHROMAT_FILE: MSMg01no442_l05.b1 PHD_FILE: MSMg01no442_l05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:59 2005CHROMAT_FILE: MSMg01no442_l05.g1 PHD_FILE: MSMg01no442_l05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCCTCCTTATAATTTGCTGGCGGTAAANGAANCACGTTTCAAACAGGAG
CCGNGGAATTCTATCATCCTCTCAAGAAGATGTAATACCAATATTTCTCA
AACTATTTCCCCAAATAGAAACAGAAGGAACACTACTCAATTCATTCTAT
GAAGTCACACTTATGCTGCTACCTAAAGCACACAAAGACAGAGAACTTCA
TGCCAATTTCCCTTATTAATATCAATGCAAAAATTCTCAATAAAATACAC
TGAAATCAAATCCAAGAACATGTCAAAACAATCAATCACTATGATCAAGT
AGACTTCATCCCAGGAATGCAGGAATGTTTCAATATACAGAAATCCATCA
ATGTAATCCACTATATAAACAAATTCAAAGGGAAAAAAATCCCACAGGAT
AATCTCATTAGATGCTGAAAAATCCTTTGACAAAACATAACACCTCTTCA
TGTTATAAGTACTAGAGATATCAGGAATCCAATGTCCCTACCTAAACATA
ATAAAATCAGTATACCGCATATCATTAGCCACCATCACACTAAATGGAGA
GAAACATGATACAATCCCTTTGTAATTGTTGACAAAGGTAAATTGGCCTA
ATAACCCCCTATTTATTCCATACAACACTCGGATATTCTTACCCTCAGGA
ATTTATACTCTAAACGGTCGTCCCTATCCCTTATTTGGCCACCCATTTGT
CCCCTTATTCCTCTTTTCTTTTTCTGCCCTGCTTTTTTATTCCTGCCCCC
CCCCCCTCC
ATTTCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTGTCAAAAACAATTCATTCCATGAACATATAAG
GAAGATGATTTAAAATGTTAACAATAGCACTTGAATTCATAAATGTGATA
AAATATTTTGAAGTTTCATTTGAGTATATGAAATGTTTTACATAGCTAAA
AACATGCAATTATAAACAGCATTTGGTGAAGTGGTTTAAATTTTTTTTCT
TGCTTAGATTTATTTATCTAGGAATATTACTTTTCAGAATAAATGTCAGT
TGTTTAATATCATCTTCATATTATGTANATTGTTAACTTTCCAGCAGCAG
TAATAAAAAGCTATGATTTCTTACCACATGTATTATGTTTTACAGATATT
TATCTATCATATCAGTTTTTAAATGCTCAATAATTCTTTCTATAGTGACA
CAGTATTTCTTTTCCAAGTAATATATAGCTTCCCTTCATTATCTAAATAT
TTTGCAAGACCCTCCTATAAGTATTACCCCAACCCCATTACTCTTCATTT
CTACCATGGACTATTCTTCACCTTCACTTTTTTCAACCCTTCTTCCTCCT
TTCCTTATATTGCCTACTCACTCATCTCTCATCCTTTTTTTGCATTATCT
CTCCTCCTTTCCTTGCAATCTTTTTTCCTTCTTTTTTTTTCACCTCTTTC
TATGTTATTTCTCTCCTCCCCTCCCCACCCTTTCCTCTTCACTATCTTCT
TCTCCTTCTCCTCTTCCTCCCCTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no442_l05.g1 MSMg01no442_l05.g1 CHROMAT_FILE:
MSMg01no442_l05.g1 PHD_FILE: MSMg01no442_l05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:59 2005
         (246 letters)



>mm_chr1_49676110_49676755
          Length = 646

 Score =  453 bits (234), Expect = e-132
 Identities = 243/246 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcattccatgaacatataaggaagatgatttaaaatgttaacaatagcacttgaattca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ttcattccatgaacatataaggaagatgatttaaaatgttaacaatagcacttgaattca 387

                                                                       
Query: 61  taaatgtgataaaatattttgaagtttcatttgagtatatgaaatgttttacatagctaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 taaatgtgataaaatattttgaagtttcatttgagtatatgaaatgttttacatagctaa 327

                                                                       
Query: 121 aaacatgcaattataaacagcatttggtgaagtggtttaaattttttttcttgcttagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 326 aaacatgcaattataaacagcatttggtgaagtggtttaaattttttttcttgcttagaa 267

                                                                       
Query: 181 ttatttatctaggaatattacttttcagaataaatgtcagttgtttaatatcatcttcat 240
            |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 266 atatttatctaggaatattacttttcaaaataaatgtcagttgtttaatatcatcttcat 207

                 
Query: 241 attatg 246
           ||||||
Sbjct: 206 attatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)