BAC Information

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BAC

Clone NameMSMg01-442M23
Chromosome1 (Build37)
Map Location 108,515,917 - 108,516,266
singlet/doubletsinglet
Overlap geneBcl2
Upstream genePign, 2310035C23Rik, LOC100042023, Tnfrsf11a, EG635504, Zcchc2, EG435634, Phlpp, LOC626075
Downstream geneLOC100042085, Fvt1, Vps4b, Serpinb5, LOC671141, Serpinb12, Serpinb13, LOC666394, Serpinb3a, Serpinb3d, LOC100041276, Serpinb3b, EG666401, Serpinb3c, LOC666414, Serpinb11, Serpinb7, Serpinb2, Serpinb10, Serpinb8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-442M23.T7 (MSMg01no442_m23.b1)MSMg01-442M23.TJ (MSMg01no442_m23.g1)
ACCAG532366AG532367
length827798
length of high quality
(start - end)
279 (48 - 326)426 (77 - 502)
definitionCHROMAT_FILE: MSMg01no442_m23.b1 PHD_FILE: MSMg01no442_m23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:09 2005CHROMAT_FILE: MSMg01no442_m23.g1 PHD_FILE: MSMg01no442_m23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCTATAATTTTGCGGCGCTATACGAATCACTATATTCCGAGAATCCGC
GGAATTCTCTGATGATTCCCGGTGTGGGTGTGTGCACACTGCGCCCACCT
TCATCCTAAGCCCAACACACAAGTCATTCAAAAGTAAAATACGTTCAAGA
CCAGCCTGGTCTACATAGAGAGTTCCAGGATAGCCAAGTCTACAGAGAGA
AACCCTGCCTCACAGGAGAAATTAAAAAAAACTCTTCAGGAAAAGGAACT
CCTGGGAGCAGCCTCTACCCATGACTGACAGGACTCGGTATCGATATACT
TCAGCTTCCAGTTCCTGAGGCACAGGCTTTGTGAGCTCACCAGCTTCTGG
CACACTGGCTGACTGCTTTCCCTGACATTATTTCCCCAGAGGCTTCGTGT
CTCCTGGCTTCATCTCTGGAATCACTCTGAGATCTCTCTCACTCAGAGGG
GAAAATGANCCCCTAAATAGGTATTTTCCTCCCCCTGTGGAACGTGGTCT
TCGTGTCATTGTTAGTGTTTTATTTTAGTCCGGNGCCTCCATCCCCCTCC
CTCTTATATTTTGTTTGAATGCAATGCTGGTGCCATTTGAATGGGTTTGT
TTGTGNTTACCCTTGCTCTGCCGCTGCTTGGCATTAATTTTACCCCCACT
TCCTGGGTCTGATATATATAAACATCTTCTTCAATTAAATCCCCAATAGC
ATTCTTTTCCCCCTTTTTGTTCACCCTAAAAACTTCATTGCTTCCTATCC
ACAGTTATTATCTCTTTATAAATCTACCCTGCCCCACTTTTCTTAATAAA
AGTTCTTCTTCTCCTACACCTCCTACT
NCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATGTTTAGGTAGTCTTGCCTGGC
CACCAAATCCTTGAGATCCACCTGTTTGTGTCCACCCCGTGACCCCTACC
TCATATCCTAGGCACTGGATCACACTGTTCCTGGTTTTACATGTGTTCTG
GGATCAGAAGTAAAGATTTTATGCTTGCATAGCAAGCGTGTTATCCACTG
AGTGATCTTCCTAACCCCTCTACTTTCCTTCTCTCCCAAAGGAGAATCTC
CTCTCCTCTTCTCCCCTCCCCTCTTTTCCCCTCTTCTCTCCTTTCCTCTT
CTTTTTCTTTCCTTTCTATATTTCCCCTCCAGTTTAGGCTTCATCACCTT
CCAGAGCTCCTCTCTGAAGACTGAAGCCAAGGAGGCTTATCTTCTGCCTT
TAACTCCTTTGGAGTTGGTCATTTGAGCTCTATAACTACCACCATATTAT
CCCGGCGCATTTTGTTATTGTGCTTGTATTTTAGCCTCACATGGAAACTG
AAAGAGCCCGGTCTGCTAAGCACCTGTTGACCTCGCGTTCCCCCCTCCTG
AATGGTTGCCAACAGGTTCTTGTTTAAAAAACACTTGGCATGTTGGCCCT
TGTTTGTCCTAGGGCTCTGGGGAAAACATTCTCTTTCCCATAAAATAATG
GGTTTCTGGATTACTCTTTAATGTGCTCTCTTTAATTTTCCCCCCTCTTC
TCCCCTTTTTTTGTATTAATATGTACAATTACTCCCCTTTTCGCCATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no442_m23.g1 MSMg01no442_m23.g1 CHROMAT_FILE:
MSMg01no442_m23.g1 PHD_FILE: MSMg01no442_m23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:09 2005
         (426 letters)



>mm_chr1_108515441_108516266
          Length = 826

 Score =  654 bits (338), Expect = 0.0
 Identities = 347/350 (99%)
 Strand = Plus / Minus

                                                                       
Query: 77  atatcctaggcactggatcacactgttcctggttttacatgtgttctgggatcagaagta 136
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 atatcctaagcactggatcacactgttcctggttttacatgtgttctgggatcagaagta 767

                                                                       
Query: 137 aagattttatgcttgcatagcaagcgtgttatccactgagtgatcttcctaacccctcta 196
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 aagatttcgtgcttgcatagcaagcgtgttatccactgagtgatcttcctaacccctcta 707

                                                                       
Query: 197 ctttccttctctcccaaaggagaatctcctctcctcttctcccctcccctcttttcccct 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 ctttccttctctcccaaaggagaatctcctctcctcttctcccctcccctcttttcccct 647

                                                                       
Query: 257 cttctctcctttcctcttctttttctttcctttctatatttcccctccagtttaggcttc 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 cttctctcctttcctcttctttttctttcctttctatatttcccctccagtttaggcttc 587

                                                                       
Query: 317 atcaccttccagagctcctctctgaagactgaagccaaggaggcttatcttctgccttta 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 atcaccttccagagctcctctctgaagactgaagccaaggaggcttatcttctgccttta 527

                                                             
Query: 377 actcctttggagttggtcatttgagctctataactaccaccatattatcc 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 actcctttggagttggtcatttgagctctataactaccaccatattatcc 477


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space:   340689
Effective search space used:   340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)