BAC Information

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BAC

Clone NameMSMg01-443D21
Chromosome1 (Build37)
Map Location 10,058,244 - 10,058,486
singlet/doubletsinglet
Overlap geneCspp1
Upstream geneSntg1, LOC100039464, EG620853, LOC665138, Rrs1, Adhfe1, LOC620542, 3110035E14Rik, Mybl1, Vcpip1, LOC100039536, LOC665173, Sgk3, EG620986, LOC100039643, 6030422M02Rik, LOC100039596, 4930418G15Rik, Cops5
Downstream geneArfgef1, Cpa6, LOC433271
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443D21.T7 (MSMg01no443_d21.b1)MSMg01-443D21.TJ (MSMg01no443_d21.g1)
ACCAG532695AG532696
length818532
length of high quality
(start - end)
---245 (80 - 324)
definitionCHROMAT_FILE: MSMg01no443_d21.b1 PHD_FILE: MSMg01no443_d21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:47 2005CHROMAT_FILE: MSMg01no443_d21.g1 PHD_FILE: MSMg01no443_d21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GAGACCCACGAGAACGACAAGCGAGGAGAAAACGAAAGAAAAAAAAAACA
TCATTTGCCGCCAGGAGACCCACGAAACCACATAAAAGAAACGGGAGAGC
GGAATCAAAGACGCAGGGTCAGTTAATCGTGTCCAAAAGAGAAAGGAGGG
CGGGGAAATTTCTCGGAACCCTCTATTCCCCCCCGGAAAAAAAGCAGGGA
AACTGGCACAACGAACACCAACCCCTTAACAGGGTGAAATTAAAAATAGA
GAAGGAAAACTCTCCAGCCCTCGGGGGGGCCCTTGTGGCAAGCAAACCAG
GGGAATCCCGGCAGAAAAAAAACAAAAAAAAAACGGGGCCCAGGTAAACG
GGCACGGGGGCCTATACCTTTCCCACCACTTATACCAAAGAAGAGTAGGG
CGGGCCACAAAAAAAAAGAGGCAAAGGGACCCCGCGGTGCCAGGAGAAAA
CAATAACGCGCGGGGCCGCGAAAAAACAACCGGAGGAGAGGGGAAAAAAC
CACCTCTCGAGGAAGAGACGGCCCAACAAGCGAACAGGGCACAAAAAGGG
GGCCCCCGTTCAGGGGGAGAGAAACGCAGGCGAATAAAAAGGGCGCAACC
GGTGAAACATATCAGAAGCGGATGGGAAAATATAAAAGATACACCCCGGG
GGCACCGAAATATATAAGGCGAACGCGCACATTGTCCTGCGCGAAGAAAG
AAACAAACCGAACGACCCGACCGCGGGGGGAGACATAAACTGGGGGCGAG
AAAGGGGCTGCGCACACCGCTGGGTGATTATACATATAACAAAAGCGAGA
AAGCCGGAAGAAACGCGC
CTCTTTCTACATGCAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTTTCATGAGAAGAGGTG
GATATATAACCTGTATTATCAAGAAACATGAGGAACAGCCAAACATATGG
AGATATGGCAGCTGATATATTAACAAAATGTAGCCTTTTAGTTTGAAGAA
ACAGTGTTCAGAATGGAGATCATAAGAACCAGCCTTAAGTACTCTCAGTA
CAGTTGAAGGAAGTTGGTAAAGGTCGTTACATTTATGAGATACGTGCCGT
TATGATGCAGTCCTCAGAGAACTAGAATACTATAAGTTGTTTTGATTTCA
TATGTGAAAAGCAAGGCATCAATTGTCGAAAGTCTCATAAAATTCCAAAC
TTAAAGTTATGTTTTCATTATATTCTGGAGGTAAATATCATAACCAGGAA
ATAACAGTTCTATTAAAATTCCTCAGTGTACACGAGAAAGACACCCATTC
TAGGATCCCCATGGAGTCGCCTGGTGTCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_d21.g1 MSMg01no443_d21.g1 CHROMAT_FILE:
MSMg01no443_d21.g1 PHD_FILE: MSMg01no443_d21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:47 2005
         (245 letters)



>mm_chr1_10058044_10058689
          Length = 646

 Score =  462 bits (239), Expect = e-135
 Identities = 242/243 (99%), Gaps = 1/243 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttttttc-atgagaagaggtggatatataacctgtattatcaagaaacatgaggaacag 59
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 cttttttcaatgagaagaggtggatatataacctgtattatcaagaaacatgaggaacag 384

                                                                       
Query: 60  ccaaacatatggagatatggcagctgatatattaacaaaatgtagccttttagtttgaag 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ccaaacatatggagatatggcagctgatatattaacaaaatgtagccttttagtttgaag 324

                                                                       
Query: 120 aaacagtgttcagaatggagatcataagaaccagccttaagtactctcagtacagttgaa 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aaacagtgttcagaatggagatcataagaaccagccttaagtactctcagtacagttgaa 264

                                                                       
Query: 180 ggaagttggtaaaggtcgttacatttatgagatacgtgccgttatgatgcagtcctcaga 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ggaagttggtaaaggtcgttacatttatgagatacgtgccgttatgatgcagtcctcaga 204

              
Query: 240 gaa 242
           |||
Sbjct: 203 gaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 646
Length adjustment: 9
Effective length of query: 236
Effective length of database: 637
Effective search space:   150332
Effective search space used:   150332
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)