BAC Information

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BAC

Clone NameMSMg01-443E06
Chromosome1 (Build37)
Map Location 160,073,804 - 160,073,988
singlet/doubletsinglet
Overlap genenone
Upstream geneRasal2, Gabarapl2-ps1_1522.1, 2810025M15Rik, BC026585, Lztr2, LOC664935, LOC100039217
Downstream gene6430517E21Rik, Astn1, Pappa2, 4930562F17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443E06.T7 (MSMg01no443_e06.b1)MSMg01-443E06.TJ (MSMg01no443_e06.g1)
ACCAG532713AG532714
length722786
length of high quality
(start - end)
191 (126 - 316)59 (173 - 231)
definitionCHROMAT_FILE: MSMg01no443_e06.b1 PHD_FILE: MSMg01no443_e06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:49 2005CHROMAT_FILE: MSMg01no443_e06.g1 PHD_FILE: MSMg01no443_e06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCACCTCATAATTTGCGGCGCTAAAAGAACACTATTTCCCACCCGGCGNG
GAANCACNTNATAACAAAACAGCGGGAANCAAGCCNCANNCCCAAGCACN
GGNNNCCAANAANCTTTTTCCCATATCTATCTCTGTTGGCCTGACATCCC
TCCGGTTGTTCTAGAGTTTGGCCAGAGGGACACTTACTATCTTCCTCAGA
CTCAATAGCATCCTTTTTGTGTGCCCCAGCCATGATGGGTGCTCAGTTTT
TATTTGTTGAATAATGAATTCCCCATTCCCTTCTTATACCTTTCCTCTAC
TTCAGCCCCCCTCTTTTTTTTTTTTTCCCACNCACACACACACACACCCC
CTCTCTTTCTTTCTCTCCCCGCCCCCTTCCCCTTTCTTTTTTATTTTGCC
GATCTTTTTATTCGCCCTCTTTTTCTTTTTTCCTTTCAATCTTTCCACTT
ATTTCTTTTTTCTTCCTCCTTTTTTTTTTTCCCCATCCCTTTTCATTCAT
CACCCCCTATTTGTGCCCAATTATCGTATTCTTTCGCTTCGTACCCTTTT
TTTATACCTTTTTTCTTCCATACCTCATTTTCTTTTCTTCCCTTTTTTTT
TCTGGTTTTTTACTTTTCCCATCCGCCTTTCCACCACATTGCACATGCTT
TTTTTTTTCCCTTTCCTCCCCCCTTTTTTTTCCCTTTCTCCTTTACCACC
TTTGTTCCCTTATCTGTTATCC
TTCTCGATGATAGGGAGGCTGGNGGCGCCTGGTTTCGAACCTGANGGAAC
NANAGAAGTTACACGACGGGGGCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCCCCACCCCCTTCA
TTCAGCTTCTGCTGCATATCGCCCACTACAGAGCTCCCCGCATCTCCCAC
AAGAAAATTATTTCAGTACACAGAGCTCGGAACAGCAAGTGGTCTCTTTT
TAGGCCTGCGCACATTGGGTACTGATTTAGTGAGTGTCTAAGTGAGCGCC
GGGCGACAGTTTTTTTTCTTTTAGGCCAGCCCCCCAGGAAGACCAAAACA
GGAGAGTTTTTCCCCCGCCGTGTGTGTCAGAGGTCCGGCCCGCACTAAAT
TTTTTTGCGCGATTTTCCCGCTTCCCATGGTGTTTCTTTAATGTTTTCCA
GCCTCGACTCATATGCCCCGTGCGCTTTATTTTTCCCCCGCGGTCTCCTT
TGCCTATCTATGTACCCCCCCCCGGGTTCCCCCACTTCTTTTTTACCCTC
CTATTTTATTTTTTTCCGCTTATTCTCCCTGCACCCAAGGCTTTCTTGCC
CAAACCCGCCCGCCAACCACCGCGATTTACTTTTCTCTCCCCCCCCTTTT
CGTATCTATATCCCAACGACTCTGCTTATTTTTCCCACACCGCCACCTTT
CCCTCTCTCGCTCTATATTTTCATTTTTCTATCTCACCGCCCATATCCCC
CCGATATTTGGTTTTCGTCCGCTGTATCTATTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_e06.b1 MSMg01no443_e06.b1 CHROMAT_FILE:
MSMg01no443_e06.b1 PHD_FILE: MSMg01no443_e06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:49 2005
         (191 letters)



>mm_chr1_160073604_160074191
          Length = 588

 Score =  294 bits (152), Expect = 2e-84
 Identities = 178/192 (92%), Gaps = 11/192 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctatctctgttggcctgacatccctccggttgttctagagtttggccagagggacactt 60
           ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 201 tctatctctgttggcctgacatccctccggttgatctagagtttgaccagagggacactt 260

                                                                       
Query: 61  actatcttcctcagactcaatagcatcctttttgtgtgccccagccatgatgggtgctca 120
           |||||||||||||||||||   ||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 actatcttcctcagactca---gcatcctttttgtgtgccccagccatgatgggttctca 317

                                                                       
Query: 121 g----tttttatttgttgaataatgaattccccattcccttcttatacctttcctctact 176
           |    |    ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gcaaat----atttgttgaataatgaattccccattcccttcttatacctttcctctact 373

                       
Query: 177 tcagcccccctc 188
           ||||||||||||
Sbjct: 374 tcagcccccctc 385


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 588
Length adjustment: 8
Effective length of query: 183
Effective length of database: 580
Effective search space:   106140
Effective search space used:   106140
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)