Query= MSMg01no443_l21.b1 MSMg01no443_l21.b1 CHROMAT_FILE:
MSMg01no443_l21.b1 PHD_FILE: MSMg01no443_l21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:26 2005
(278 letters)
>mm_chr1_95545310_95545987
Length = 678
Score = 509 bits (263), Expect = e-148
Identities = 269/271 (99%)
Strand = Plus / Minus
Query: 8 tcaggtcttcatggcaagcacactgtcagatgagtcctcttctgacccttccaaccctca 67
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tcaggtcttcatggtaagcacactgtcagatgagtcctcttctgacccttccaaccctca 419
Query: 68 gaaattcttactatcccagtgctgtgtctctcatcctttgacatgcccggctgtggctgt 127
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 418 gaaattcttactatcccagtgccgtgtctctcatcctttgacatgcccggctgtggctgt 359
Query: 128 ggcggaggcggaggcacagcttgcatggccacctatgttcttggtggttcagaacgaagg 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggcggaggcggaggcacagcttgcatggccacctatgttcttggtggttcagaacgaagg 299
Query: 188 gctccagccattctgtggcactaaaacctccaggaggcttccctggctccacgcctcccg 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 gctccagccattctgtggcactaaaacctccaggaggcttccctggctccacgcctcccg 239
Query: 248 cttggtcccacttcccttctctttgcttttc 278
|||||||||||||||||||||||||||||||
Sbjct: 238 cttggtcccacttcccttctctttgcttttc 208
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space: 179961
Effective search space used: 179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no443_l21.g1 MSMg01no443_l21.g1 CHROMAT_FILE:
MSMg01no443_l21.g1 PHD_FILE: MSMg01no443_l21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:26 2005
(328 letters)
>mm_chr1_95376747_95377474
Length = 728
Score = 495 bits (256), Expect = e-144
Identities = 298/328 (90%), Gaps = 27/328 (8%)
Strand = Plus / Plus
Query: 1 tttgcaatacccagcattcaaactgtcagtgtgtgctgctatatctaattttggggatga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgcaatacccagcattcaaactgtcagtgtgtgctgctatatctaattttggggatga 260
Query: 61 tttttttagttttaaaagttgtcctgatccttttttatcatttttccacctagtccccct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 tttttttagttttaaaagttgtcctgatccttttttatcatttttccacctag------t 314
Query: 121 gtccccgtccccgtccccgtccccgtccccccccacccctttacagagcaccagaggtca 180
|||||| |||||||| |||||||||||||||||||||||||
Sbjct: 315 gtcccc--------------------cccccccc-cccctttacagagcaccagaggtca 353
Query: 181 gtaaagaacaagagcttctccttctgggtttgctgggtagcctagggaaaggaggtgggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gtaaagaacaagagcttctccttctgggtttgctgggtagcctagggaaaggaggtgggg 413
Query: 241 cctccctctattatcaatcgtgaatgtaattaagctccctttgtttgaggtttgctgctc 300
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 414 cctccctctattatcaatcgtgaatgtaattaagctccctttgtttgtggcttgctgctc 473
Query: 301 caagctccattaaaagtgttgtcttgca 328
||||||||||||| ||||||||||||||
Sbjct: 474 caagctccattaagagtgttgtcttgca 501
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space: 229361
Effective search space used: 229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
