BAC Information

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BAC

Clone NameMSMg01-443N08
Chromosome1 (Build37)
Map Location 12,562,862 - 12,563,046
singlet/doubletsinglet
Overlap genenone
Upstream geneA830018L16Rik, LOC665262, LOC100039709
Downstream geneLOC621353, LOC100039733, Sulf1, Slco5a1, LOC383490, Prdm14, Ncoa2, LOC665341, LOC100039812, EG621685, Tram1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443N08.T7 (MSMg01no443_n08.b1)MSMg01-443N08.TJ (MSMg01no443_n08.g1)
ACCAG533145AG533146
length759766
length of high quality
(start - end)
186 (76 - 261)191 (133 - 323)
definitionCHROMAT_FILE: MSMg01no443_n08.b1 PHD_FILE: MSMg01no443_n08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:33 2005CHROMAT_FILE: MSMg01no443_n08.g1 PHD_FILE: MSMg01no443_n08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTGATTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGCGACC
GCGGAATCATGGATTTCCCCGCAGGCAATCCCGGGAAAGGCACTGTAGGC
TGTTCACCTTGCTCCACTCCTAGACATGGAGCTGAGGTCATCAGGAACTT
TCCTTTGGTAAATTTGAGCCTGAGAACCCATCCTGTACATTTGTATACAG
TGAACATGATGGTCTAGAGAAAGCTTTCCTGGGACTGGTAATCCTGGTCT
TAACTGAAGATTCTTGGCGGGAAGTATAAGGTTCTGTGAAACAAACAGGG
AGCTGATTTATAAGAAAACTTTTTTTTTAGACTGACTTTCAAAAGTCTCA
GGTAACAAAACTTAATTTCTACTTCAAGGTTTCCTGGTCTACCTGACCTT
GGAACCTCCTTTCCCAGGTACAAGCTTGGGTGACATGGTCCTGCAGGTGC
GAAAGGTCCTTGCTGCCATACTTGACACCCGCATTGCACCCTGTATCCTC
TGAAAATTGCCCTCTGATCTGATACCACCCTTTTCCCCTTTCCCTTATTT
TCCCCTATTTCCCTTCCCTATTTCTTATTTCCCGCCCTCCTCTATTTTTC
TCCCCCCCTTTTTTTTTTTGTTTTTTTTCCCCGTGCCCCCCCCCCCTTAT
CTCCCCTTCTCCTCCCCTTTACTCCTTCGCATTATTTCGCCCGGCCCTTT
TCCTTTTATCCCTCGCCTTTCCCGTGATTTCTTATATTCCCTCTTTCTTC
CTTCCCCAC
TTTTCCATGATATTGTGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTCCATGTTAGAAAAAAAAT
GTACTTGTTTTTCCTAAGAAACAAGGGGCTAAGGTAATAAAATACTGATT
CATGGGATAATCAAAAAGTAATTTTGGGAATATATTGAATTGATATACAA
ATAAAAGACTGGGCTTTGGTCTGCAAGAGCAGAGCTGTCTAGAGATCTCC
GGAGAGCTGTCTCAAGCAGAACACAGAGTTATTAGCTTATACCCATGATA
GACTTCTAATAGTACATTTGCTTTTCTTATATGCCCTTTCCTCAGAACCC
CTCTCCAAGCCAAGGCTTGTCCTTAGCAAAGGAAAAGCTGTTAACTGGGA
GTGGAACCAGACCATGAGAAAGAAGCGTTTTATAGTCTACAACGCTGAAG
GAGTTGTATATCTGAAGCTCACGTCGTCTTCTCATCTGCACGTGCACCGT
TTGGATTTTCGCCCCCCCGCCCTTTTGTTTCGCTTTTCTCTTATCAATCC
CCCCCCCCCCGCCCCTTTTTATAGGCACTTCACCCTCCCTTTTTTGTTAT
TTTCCATGTTTATCCTCCCCCCCACTTTTCATATTCCCCCCATTTTTATC
CCACCCCCCTTTTTTTACAACATCCTCCCCTATTCCTCTCCCCCACTTAT
CCGCCCACCTCCTTATCTTATTTTTATTTTCGCCCCCGTATTTTTCGCCC
TCTTTATTTCTTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_n08.b1 MSMg01no443_n08.b1 CHROMAT_FILE:
MSMg01no443_n08.b1 PHD_FILE: MSMg01no443_n08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:33 2005
         (186 letters)



>mm_chr1_12562661_12563246
          Length = 586

 Score =  319 bits (165), Expect = 6e-92
 Identities = 180/185 (97%)
 Strand = Plus / Minus

                                                                       
Query: 2   aatcccgggaaaggcactgtaggctgttcaccttgctccactcctagacatggagctgag 61
           ||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 386 aatcccgggaaagacactggaggctgttcaccttgttccactcctagacatggagctgag 327

                                                                       
Query: 62  gtcatcaggaactttcctttggtaaatttgagcctgagaacccatcctgtacatttgtat 121
           |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 326 gtcatcaggaactttcctttggtaaatttgagcccgagaacccatcctgtagatttgtat 267

                                                                       
Query: 122 acagtgaacatgatggtctagagaaagctttcctgggactggtaatcctggtcttaactg 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 acagtgaacatgatggtctagagaaagctttcctgggactggtaatcctggtcttaactg 207

                
Query: 182 aagat 186
           |||||
Sbjct: 206 aagat 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 186
Length of database: 586
Length adjustment: 8
Effective length of query: 178
Effective length of database: 578
Effective search space:   102884
Effective search space used:   102884
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)