BAC Information

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BAC

Clone NameMSMg01-443O01
Chromosome1 (Build37)
Map Location 181,471,302 - 181,471,534
singlet/doubletsinglet
Overlap geneTfb2m
Upstream geneD230039L06Rik, Kif26b, Smyd3, LOC666354, LOC433941
Downstream geneLOC100040874, 9630058J23Rik, Sccpdh, Gm1305, Ahctf1, LOC100040914, LOC100042190, Cdc42bpa, Cabc1, Psen2, EG277333, Itpkb, 6330403A02Rik, Gm821
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443O01.T7 (MSMg01no443_o01.b1)MSMg01-443O01.TJ (MSMg01no443_o01.g1)
ACCAG533179AG533180
length785722
length of high quality
(start - end)
---235 (129 - 363)
definitionCHROMAT_FILE: MSMg01no443_o01.b1 PHD_FILE: MSMg01no443_o01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:37 2005CHROMAT_FILE: MSMg01no443_o01.g1 PHD_FILE: MSMg01no443_o01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTATGGATTAGTCCTACATNTCAGNCNAACGANTANTACTTCAAAAGAG
ACCGCGGAATTCAATTCCTACCCAAAAAGAAGTGGCTCACAACCATCTTT
AGGGGAATCTGATGCCCTCTTCAGGCACCCGGACGCATATGCAGCAGATA
ACTCATATTACACACACTACAAAAAAAACATACGTCCTGCAAACAAACAA
ACCAAAGTGACTCGACCCTGATAAATCCCACCTTGGAGACCAATGCAAGG
CCTCCTTTGTTACACGAAACTAAGCCTCGCGCTTTCCCACTGAGTAGGGG
AACCCCTGCCAACACACTTCTATTTTTTTTTTTGCCAACTGGTCGATCCC
ACGCATTTTACTGCCATATATTCCCGCCCGCCCTTACATCACACGTTTTA
CGTTGTCCCCCTATTCGCCCTCGTGTGTTCACCCCCCGCCCCCCCGTTCC
CCCCGCCCTCTTTCCCCCCCCTTTTCTTTTTTTCTCTTTATCTTTCCCCC
TTACCCCTTTCCCCTGTCCCTTTTCCTTTTTTCCCCTTTTTTTTTTCCCA
CCCCCCCCCTTCTTTCCCCCTTTTTTTTTTCCTCCCCACCACCTTTTTTT
TCCCTCTCCCTTATTTCCCCCACACTCCTTTTTTCTACTTATTAACCTCT
TGTATTCCCCCCCCCGCTTCCTCCTTCTTTTTTTTTCCACCCCCCCCTTC
TTTCTTTTCATTTCTTTTCCCCCCCTTCTTCTCCCTTTTCTATAACCCCA
TTCTTCACCCCCTACCTATCCTTCTTTCCTTTCCC
TTTTCTCGAAGCTGTGTGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCAGACTGAAGAAAGATAA
CGTCCAGGAAGCTAGAAGAAATAATAAAGTTCACAACAAATAGTAGTTGA
TCAAAGGATGAATAAGAGAGCATCCAAACTACAGGATCAATGAAATAGAC
ACATTCCAATAATAATGCTTACTCTTAATAGTCTAATAAATTCCCCAACC
AAAAGGTAAGATCAGCAAATTAAACTTAAAAACAGGATCTAATTGCGTAT
TGTTAATATACAATGACATTTCCTTTTTTTCAGTCATAAAGAACAAAGTT
ATGTCACTGTGGACAAATGAAAAAAACAAATCAAACAAATGAAGATTATC
ATATTAAGCAAATTAAACCAGCTTCAGAAAGTCTTCACCTTGCTTTCTCA
CATATGTGGTTATTAGATTTACATAGATTCATAACATCATGTATTATATG
ATGATGAGAAAGCAGAAGCAACACAATTTATTAGATAAGGCAAGCTAGCA
GGATTGAACGTTTAGTACAGAGGTGCTGATGACACGGTTCTGTGGTTAAT
AGCACCAGCAGCTCTTCTATCACCCTTGGTTATTTCCCCAGCACCCACTT
GGTACCTCCAATTGTGTACATTTCCCCGTTCCAGCTTTACCCAATGGCTC
TCCCTTTGGACCCATCTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_o01.g1 MSMg01no443_o01.g1 CHROMAT_FILE:
MSMg01no443_o01.g1 PHD_FILE: MSMg01no443_o01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:37 2005
         (235 letters)



>mm_chr1_181471100_181471734
          Length = 635

 Score =  435 bits (225), Expect = e-126
 Identities = 231/233 (99%)
 Strand = Plus / Plus

                                                                       
Query: 3   tcacaacaaatagtagttgatcaaaggatgaataagagagcatccaaactacaggatcaa 62
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 tcacaacaaacagtagttgatcaaaggatgaataagagagcatccaaactacaggatcaa 262

                                                                       
Query: 63  tgaaatagacacattccaataataatgcttactcttaatagtctaataaattccccaacc 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tgaaatagacacattccaataataatgcttactcttaatagtctaataaattccccaacc 322

                                                                       
Query: 123 aaaaggtaagatcagcaaattaaacttaaaaacaggatctaattgcgtattgttaatata 182
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 323 aaaaggtaagatcagcaaattaaacttaaaaacaggatctaattgtgtattgttaatata 382

                                                                
Query: 183 caatgacatttcctttttttcagtcataaagaacaaagttatgtcactgtgga 235
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 caatgacatttcctttttttcagtcataaagaacaaagttatgtcactgtgga 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)