BAC Information

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BAC

Clone NameMSMg01-444C18
Chromosome1 (Build37)
Map Location 71,991,600 - 71,992,123
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042809, Bard1, LOC667900, Abca12, LOC629101, Atic, Fn1, LOC100042814, Gabarapl2-ps1_652.1, LOC383528, LOC675667, EG667931
Downstream geneEG433319, LOC667937, LOC100043255, Mreg, Pecr, Tmem169, Xrcc5, March4, Smarcal1, Ankar, Rpl37a, Igfbp2, Igfbp5, LOC672187
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444C18.T7 (MSMg01no444_c18.b1)MSMg01-444C18.TJ (MSMg01no444_c18.g1)
ACCAG533403AG533404
length7281,057
length of high quality
(start - end)		527 (49 - 575)---
definitionCHROMAT_FILE: MSMg01no444_c18.b1 PHD_FILE: MSMg01no444_c18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:00 2005CHROMAT_FILE: MSMg01no444_c18.g1 PHD_FILE: MSMg01no444_c18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTACACATTCCCTCAGAAAACACCATGGTTGTTGATTTGGAGT
CAGCTTTAAGAAATCCATAATACCTGAGTGAGTTTCCCTTAGAACCCAAA
ACTCTCTTCATCAGTAGTGATCCAGTCTCTCGCATACTTCCACAGAGACC
CATTTCGAGACTCCTGGAGTCCTTGTATGCCTTACAAGGTACGGTGAGTC
AGCAGAGAAGAGGGAAACTGCCTGTAACTTCTCGGGGCATTTTAAGCCAT
CTGCCAAACCCTGGCTTGCCAGCTGGCACGGAACAGTACTCTTCCATCCA
GCAAGGACTCACGTATGTGTAGCTGAAGATGGACATAAGTTGTTCCGTTT
TAACCTGATTCATCCACATGAATAAACAGTGAAGTGTATTCCCCTGGTAA
GGTGGCTGGCAGTGTGAGCCACAAAGTAAATTATGAAGGATTAATTTCCC
ACTTTGTCCTTCCACGGAGAACACAGTGTCCAATGCTATTCTCAAAGCTT
CTTAGACACCCCCTCTTGCCCCTGTTGGTACCCCAACACACACCCTCCTT
CCTTAGGTCTGGGTCTAACCTGCCTCTTTTGGAAGTAAGCTTGCACTTCA
AATGACTCTTACATTTAACTCCCTGAACCTCAATATTTCCAACTTTTGCC
CATCACACTTCTGCTAATACTTTCCGAT

CCCCCCTGGGTTGGTATATCTTGATCCCCGCGGTCTCCTCCCAGGGGCGT
TGGGGACGGTGTGATCTCTTCTAATTATAGCGCGGTCGGCCGCGCGCCGG
CGGCGCCCCCTTTCTTTTTGTTTTCGCGCCCTTCTCGTTCCTCTCTCCCT
CTCTCCGCGCGTGTTGTGTGTTTTTGCTCTTTCTCTCCTTTCTCCCTCCT
CCCGCCCTTTAGCTCTCGCTTCGTTTCTCTCCTTGTCCGTTTGCCCCTTC
TGTCTTTCCGCCCGCCCTTTTTTGTCTTTTCCTCTCCCCCCTTTCTCCTC
TTTTCTTTTTTCCCCCCTGCTCCCGTCGTTTGTTGACGGCTACCTCGCCT
TTCGCCTTTACTCCGTCTTTTTGTTTTTCCGTTTCGCTGGCCGCGCGCTG
GCCGCCTTTCGCGCGGGGCGTTTTTTTTATGCTCCGCGCCCCCCGCTTTC
CCTTTCTGTTTCCTATCTTTTTGCCCCCCTGGGGTGGTTGGCCCGAGCCG
GTTGGTGTCTCGCGATGCGGCCCGCATTAGCGCCGACGTCGGCGTGTCCT
TCTCGGTATCAGCGGCATTCTGGCTTGGTTGTTTGCGGGTGTCGCTGATT
GTCGTGCGTGTGTGTGCCGCTTGCTGTTTGTCGTGTTCTCATCCGCGATT
GGAGTTTGCTGTGCCGTGTATGGGCTCGGCCGCTGTTTCTCCCGGCGTTC
CGATCATTGCTTCGTCTGCTGCGTTCGTTGTTCCTGTGGTGTTGTGCCGT
TTTATCCGTGCGAGCGACTATTCTATTGTTGTCGTACGCGCGCGGTATCG
TTTTTCCCTGCTTTGCGCCCCGTTGGTTCCTGTGTCCGCTTCTCGCGATT
CTGTACTTCCGCGTCATATCGCACCTCCGTTCCGCTCTCGGCGCTTATTT
AGTTGTCGCTCTCGTCTCTTCCTCGCTCGTCGTACCCTGCCGTCGCGCCT
ATTCGTGCTGGCCGCGCGTTCGGGTGCCGCCGCGTTGTCGTCGCCGCGCG
CTCCACGCGTTTCCGGTTTTGTAGAGCCCGTTGATGCGTGTACCGCGATT
GCGTTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_c18.b1 MSMg01no444_c18.b1 CHROMAT_FILE:
MSMg01no444_c18.b1 PHD_FILE: MSMg01no444_c18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:00 2005
         (527 letters)



>mm_chr1_71991397_71992323
          Length = 927

 Score =  990 bits (512), Expect = 0.0
 Identities = 521/524 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctacacattccctcagaaaacaccatggttgttgatttggagtcagctttaaga 63
           ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctacacactccatcagaaaacaccatggttgttgatttggagtcagctttaaga 263

                                                                       
Query: 64  aatccataatacctgagtgagtttcccttagaacccaaaactctcttcatcagtagtgat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aatccataatacctgagtgagtttcccttagaacccaaaactctcttcatcagtagtgat 323

                                                                       
Query: 124 ccagtctctcgcatacttccacagagacccatttcgagactcctggagtccttgtatgcc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ccagtctctcgcatacttccacagagacccatttcgagactcctggagtccttgtatgcc 383

                                                                       
Query: 184 ttacaaggtacggtgagtcagcagagaagagggaaactgcctgtaacttctcggggcatt 243
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 384 ttacaaggtacggtgagtcagcagagaagagggaaactgcctgtaacttctcagggcatt 443

                                                                       
Query: 244 ttaagccatctgccaaaccctggcttgccagctggcacggaacagtactcttccatccag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttaagccatctgccaaaccctggcttgccagctggcacggaacagtactcttccatccag 503

                                                                       
Query: 304 caaggactcacgtatgtgtagctgaagatggacataagttgttccgttttaacctgattc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 caaggactcacgtatgtgtagctgaagatggacataagttgttccgttttaacctgattc 563

                                                                       
Query: 364 atccacatgaataaacagtgaagtgtattcccctggtaaggtggctggcagtgtgagcca 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 atccacatgaataaacagtgaagtgtattcccctggtaaggtggctggcagtgtgagcca 623

                                                                       
Query: 424 caaagtaaattatgaaggattaatttcccactttgtccttccacggagaacacagtgtcc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 caaagtaaattatgaaggattaatttcccactttgtccttccacggagaacacagtgtcc 683

                                                       
Query: 484 aatgctattctcaaagcttcttagacaccccctcttgcccctgt 527
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aatgctattctcaaagcttcttagacaccccctcttgcccctgt 727


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space:   474089
Effective search space used:   474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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