Query= MSMg01no444_e20.b1 MSMg01no444_e20.b1 CHROMAT_FILE:
MSMg01no444_e20.b1 PHD_FILE: MSMg01no444_e20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:10 2005
(401 letters)
>mm_chr1_84106565_84107365
Length = 801
Score = 629 bits (325), Expect = 0.0
Identities = 367/383 (95%), Gaps = 6/383 (1%)
Strand = Plus / Minus
Query: 24 agactgtcagtttcgggttctccacatttccaactgatggagtgaggcccacccactcac 83
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 agactgtcagttttgggttctccacatttccaactgatggagtgaggcccacccactcac 741
Query: 84 atcaaggagaatcatgtgctttattgtttaatctaatgatgtaaatgataataatgtctg 143
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 740 atcaaggagaatcatgtgctttattgtttaatctagtgatgtaaatgataataatgtctg 681
Query: 144 aaaaaaaaacccttcactgaagtgtctatagtaatactgaacaaaatatttgggtaatat 203
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 680 aaaaaaaaacccttcaccgaagtgtctatagtaatactgaacaaaatatctgggtaatat 621
Query: 204 ggctc-accccaatttgtccataaagcaaccatcccttttactagttcttgtttggttgg 262
||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ggc-cgaccccaatttatccataaagcaaccatcccttttactagttcttgtttggttgg 562
Query: 263 ctcaggtcaggggttgtctttgagtcccagtctcccattgtcaatgtaaatgtttttaaa 322
|||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||| |
Sbjct: 561 ctcaggtcaggggttggctttgagtctcagtctcccattgccaatgtaaatgtttttgca 502
Query: 323 caaattacaacagtctttttgtgttttgctcttcccatttgtaaaatggtgtgta----t 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 501 caaattacaacagtctttttgtgttttgctcttcccatttgtaaaatggtgtgtatgtgt 442
Query: 379 gtgtgtgtggtatgtgcttatag 401
|||||||||||||||||||||||
Sbjct: 441 gtgtgtgtggtatgtgcttatag 419
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 801
Length adjustment: 9
Effective length of query: 392
Effective length of database: 792
Effective search space: 310464
Effective search space used: 310464
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no444_e20.g1 MSMg01no444_e20.g1 CHROMAT_FILE:
MSMg01no444_e20.g1 PHD_FILE: MSMg01no444_e20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:10 2005
(576 letters)
>mm_chr1_83928167_83929142
Length = 976
Score = 1021 bits (528), Expect = 0.0
Identities = 564/576 (97%), Gaps = 1/576 (0%)
Strand = Plus / Plus
Query: 1 catactcaaaaataactggtccttcccagactcccattttgagcaatatagatttgaatg 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catactcaaaaataactggaccttcccagactcccattttgagcaatatagatttgaatg 260
Query: 61 ttgtaaaagagagtgaggtgatttcagcttagattattagagtgttattggatgaataat 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtaaaagagagtgtggtgatttcagcttagattattagagtgttattggatgaataat 320
Query: 121 aataccaaggactcgtgttataggttgacttgccttcacaaaatccattggcatcccaac 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aataccaaggactcatgttataggttgacttgccttcacaaaatccattggcatcccaac 380
Query: 181 ttctaatatgattatgccaagccctttaaaataaaataattaaagttacatgaaatataa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctaatatgattatgccaagccctttaaaataaaataattaaagttacatgaaatataa 440
Query: 241 aagtattattggtggtctattatatactttcttgttgctggacaaaatagttcacacagg 300
||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagaag-acaggtggtctattatatactttcttgttgctggacaaaatagttcacacagg 499
Query: 301 caatttaaggaagaagtggcttatgttggctcatggtttaaaggtgcagtccatcatgcc 360
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 caatttaaggaagaaatggcttatgttggctcatggtttaaaggtgcagtccatcatgcc 559
Query: 361 aactggagcatgatgcagctagtcatattactttacaaatcaaatttggaagcaggaagc 420
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 560 aactggagcatgatgcagctagtcatattacttttcaaatcaaatttggaagcaggaagc 619
Query: 421 agagagggatgaatggcagtgcttggaacacttcctccttttcttcagttgacaatccag 480
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 agagagggatggatggcagtgcttggaacacttcctccttttcttcagttgacaatccag 679
Query: 481 tctgtcaatggtgctgcctacacttagaacagacctttgccctcatagacatgggtttgc 540
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tctgtcaattgtgctgcctacacttagaacagacctttgccctcatagacatgggtttgc 739
Query: 541 ataacgatcctaaatgcactcaagctagcaataacc 576
||||||||||||||||||||||||||||||||||||
Sbjct: 740 ataacgatcctaaatgcactcaagctagcaataacc 775
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space: 546756
Effective search space used: 546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
