Query= MSMg01no444_f18.b1 MSMg01no444_f18.b1 CHROMAT_FILE:
MSMg01no444_f18.b1 PHD_FILE: MSMg01no444_f18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:14 2005
(459 letters)
>mm_chr1_50279694_50280554
Length = 861
Score = 698 bits (361), Expect = 0.0
Identities = 433/457 (94%), Gaps = 4/457 (0%)
Strand = Plus / Minus
Query: 5 gaattcttcctatgtatatttttcaaagtacaaactagagacacttgttcatagccttct 64
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 gaatttttcctacgtatatttttcaaagtacaaactagagacacttgttcatagccttct 601
Query: 65 aatgacaatttacattcacatgtgaagtactcttagcatgaattatagccccatctgtag 124
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 600 actgacaatttacattcacatgtgaagtactcttagcatgaattatagccccatctctag 541
Query: 125 atatttgttttagggacatttgcattttcactatatttattgtaagaaa-tgtcagtgta 183
||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||
Sbjct: 540 atatttgttttagggacatttacattttcactatatttattgtaagaaact-tcagtgta 482
Query: 184 gttgattcaaa-acccctaggacaggtagatcag-tctgagaatgtggccattcctaaca 241
||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 481 gttgattcaaacccccctaggacaggtagatcagatctgtgaatgtggccattcctaaca 422
Query: 242 aagcattaatatctctccgctaaaagtgggctgtatacaagaggtgaaaatattttttat 301
|||||||||| ||||||| | |||||||||||||| |||||||| |||||||||||||||
Sbjct: 421 aagcattaatctctctccacaaaaagtgggctgtaaacaagaggggaaaatattttttat 362
Query: 302 ctgaccaccattgcggtgatttttaatgttttggggaaaatcaacttaggcttccttgag 361
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ctgaccaccattgcagtgagttttaatgttttggggaaaatcaacttaggcttccttgag 302
Query: 362 aaagttagtgcctatagacctaattggagacaaactacatgtgattattttgtgctaatt 421
|||||||||| |||||||||| ||| ||||||||||||||||| |||||||||| |||||
Sbjct: 301 aaagttagtgtctatagacctcattagagacaaactacatgtggttattttgtgttaatt 242
Query: 422 tctacagacttaaattattttactatacttctcttta 458
|| ||||||||||||||||||||||||||||||||||
Sbjct: 241 tccacagacttaaattattttactatacttctcttta 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 861
Length adjustment: 10
Effective length of query: 449
Effective length of database: 851
Effective search space: 382099
Effective search space used: 382099
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no444_f18.g1 MSMg01no444_f18.g1 CHROMAT_FILE:
MSMg01no444_f18.g1 PHD_FILE: MSMg01no444_f18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:14 2005
(586 letters)
>mm_chr1_50120409_50121393
Length = 985
Score = 1067 bits (552), Expect = 0.0
Identities = 575/586 (98%), Gaps = 7/586 (1%)
Strand = Plus / Plus
Query: 1 aaatgaaatctgatggagaaaagattaactatatatgtatatatagttatagttatagtt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 aaatgaaatctgatggagaaaagattaactatatatgtatatatagttatagttata--- 263
Query: 61 atatatatacacacacatatatataatttacacatacctctatatttattttaagtagta 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ---tatatacacacacatatatataatttacacatacctctatatttattttaagtagta 320
Query: 121 cacattgttcactgcttcttaaaatatatctgttttgtgtacatgttttgtttattttaa 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 cacattgttcactgcttcttaaaatatatttgttttgtgtacatgttttgtttattttaa 380
Query: 181 aactttaatatgaaacattcatattatcacattattgtaaatggaagcctaatttatgaa 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aactttaatataaaacattcatattatcacattattgtaaatggaagcctaatttatgaa 440
Query: 241 acataatgccttggcatagtttccaatacctttcctagtgctaccaaaacttttgagggt 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acataaggccttggcatagtttccaatacctttcctagtgctaccaaaacttttgagggt 500
Query: 301 gccacatagaacattctggaaatccagggtcattataaagtttctttatcttgttaggaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gccacatagaacattctggaaatccagggtcattataaagtttctttatcttgttaggaa 560
Query: 361 aataattcaaagactaactcagaaagaaatttgaagacaaattttactagagtctaaggg 420
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aataattaaaagactaactcagaaagaaatttgaagacaaattttactagagtctaaggg 620
Query: 421 aaaaaaatcagtgaagataagctataatcttagcagctgcagggaacagaaaaaaaaatg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 621 aaaaaaatcagtgaagataagctataatcttagcagctgcagggaacagaaaaaaaa-tg 679
Query: 481 aagaagatatataaagaaaagtcaggactgtagtggttgatggttgtgactgctgctacc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aagaagatatataaagaaaagtcaggactgtagtggttgatggttgtgactgctgctacc 739
Query: 541 ttgtttccttctctgagctgctggtccacttattagttctcattag 586
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ttgtttccttctctgagctgctggtccacttattagttctcattag 785
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 985
Length adjustment: 10
Effective length of query: 576
Effective length of database: 975
Effective search space: 561600
Effective search space used: 561600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
