BAC Information

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BAC

Clone NameMSMg01-444L23
Chromosome1 (Build37)
Map Location 142,879,617 - 142,879,950
singlet/doubletsinglet
Overlap genenone
Upstream geneEG545367, Cfh, Kcnt2
Downstream geneEG226472
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444L23.T7 (MSMg01no444_l23.b1)MSMg01-444L23.TJ (MSMg01no444_l23.g1)
ACCAG533841AG533842
length766774
length of high quality
(start - end)		337 (49 - 385)40 (75 - 114)
definitionCHROMAT_FILE: MSMg01no444_l23.b1 PHD_FILE: MSMg01no444_l23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:44 2005CHROMAT_FILE: MSMg01no444_l23.g1 PHD_FILE: MSMg01no444_l23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTATAATTATCTCTCTGTATTTTATGCTTCTAGTGAAAATA
TGAGTTGGCCAAAGAAAATAATATTACTACTCAAGCCACATGTTTTGTAA
CTCTCTGAGCAGAGGGCTTATTTAAATTTCAAAAAAGCAAGTAAAATCTT
ATTCCTATACACAAATGTAAAACAAAGGTTCAGAATTAAAAACATACACT
ATGAACTCAATATGATATCTGTAAGAAATTTTCTAGAATTCATAACTAGA
ACTTACCTGGCTCATTACTTACTCTAACTCATTCCATGTTAACCTAGTTT
CTTCCTTTCCCTGATTCAGTAGCCCTAGGCAGTGGTTTAAAGCTTAGTTT
ATCTAAGCAAGGTATAATGAAAAATCGAATACTATGNCACAAAAATATAT
TCATTCACAAGCGTTTGAAGAAAAATGTCCATCTCTATTTCACATTTATA
CTTGAGACTAATTGCTTACCTGAATTTAAAATGGGAATTTTTTGACTTTA
TTAAACCCTAATAACTTCTAAAGTTGAAAGTTCTCTTTCCAACCCCTTTT
ATTAAGCCCTTAAAAAGGGGTCTAAAGGAAAATGTTCGGAACCTAAATCG
GTGGAAAAACTAAAAACTTTGTTTTGAAAGGGGCAAAAATCTTAAAAAAA
ACCTGGGGCATAAAATTTTTAAAAGGGCGCCCGGGGGCGAAAACATTTTT
TTTCCCCCTTCGGGGG

CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGGGAAATGGTTCTTCTTGCAGAAA
AGTACTTGGCAAGAANCTTCACACTCATTATTTAAGACATCTGAAAATAA
TAAAGGAGCAATTTCTGAAGAGTATGAGATATAAGAGNNNNNNNGCATAA
AAAATTCACTGCTTAATACATNTCCNTCCAAAACACTAGAGGNNNNNCNC
TTNATTGTGGGTTAAAAAACCAANATTTGTCCCTAAATAAACTCGATTTG
AGAANAACTCACTTCTTAAAGGATGTTTTTAGAATCATTTTCTAAAAACT
TTGCAAGGCTTTTGCTTTCTATCCTTATTAACTAAAGGGGGNAAAAATCT
TGGTTTAGGAAAAACTACAAAAAAAATTCGCGGGGCGGGGAAAAAAAACA
CTAAAAAAAAGGCACCTGGGAAATTCTGGAAAACCCCCCCCCTTTGGAAA
GGGGTTTTTTTTAAAACCCGGTCCCCCCCTATATTTTTTTAAAAAAATGG
TTTTTTCCCCCAAAAAACCACATTTTTCCCCCTTTTTTTCTTCTTGGAAA
AAAGGGTTGTAAAAAAATTTTTTTTTCTCCCCTCCCCTTTTCCCCCTTCA
AAAAGGGGGGGCCCCAAACTTCCCTCCCCGTGGGGAAAACTACCCCCCCA
ATAGTACCCTCTCTCCCCCTCGCGTAATAAAATTGCTGTCAGCACACAAC
TATTTTCGGTGGTGCGTTTGCGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_l23.b1 MSMg01no444_l23.b1 CHROMAT_FILE:
MSMg01no444_l23.b1 PHD_FILE: MSMg01no444_l23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:44 2005
         (337 letters)



>mm_chr1_142879413_142880150
          Length = 738

 Score =  638 bits (330), Expect = 0.0
 Identities = 333/334 (99%), Gaps = 1/334 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttt-ataattatctctctgtattttatgcttctagtgaaaatatgagttggcca 63
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaattctttaataattatctctctgtattttatgcttctagtgaaaatatgagttggcca 479

                                                                       
Query: 64  aagaaaataatattactactcaagccacatgttttgtaactctctgagcagagggcttat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 aagaaaataatattactactcaagccacatgttttgtaactctctgagcagagggcttat 419

                                                                       
Query: 124 ttaaatttcaaaaaagcaagtaaaatcttattcctatacacaaatgtaaaacaaaggttc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ttaaatttcaaaaaagcaagtaaaatcttattcctatacacaaatgtaaaacaaaggttc 359

                                                                       
Query: 184 agaattaaaaacatacactatgaactcaatatgatatctgtaagaaattttctagaattc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 agaattaaaaacatacactatgaactcaatatgatatctgtaagaaattttctagaattc 299

                                                                       
Query: 244 ataactagaacttacctggctcattacttactctaactcattccatgttaacctagtttc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ataactagaacttacctggctcattacttactctaactcattccatgttaacctagtttc 239

                                             
Query: 304 ttcctttccctgattcagtagccctaggcagtgg 337
           ||||||||||||||||||||||||||||||||||
Sbjct: 238 ttcctttccctgattcagtagccctaggcagtgg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 738
Length adjustment: 9
Effective length of query: 328
Effective length of database: 729
Effective search space:   239112
Effective search space used:   239112
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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