BAC Information

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BAC

Clone NameMSMg01-444P18
Chromosome1 (Build37)
Map Location 179,414,460 - 179,414,786
singlet/doubletsinglet
Overlap genenone
Upstream geneCep170, Sdccag8, LOC666235, Akt3, Zfp238
Downstream geneEG631449, LOC100040770, 1700016C15Rik, Adss, EG631584, EG545391, LOC666262, 5830417C01Rik, LOC666284, 4930527J03Rik, LOC666295, B230369F24Rik, LOC669454, 2310005N03Rik, Hnrpu, Efcab2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444P18.T7 (MSMg01no444_p18.b1)MSMg01-444P18.TJ (MSMg01no444_p18.g1)
ACCAG534022AG534023
length779842
length of high quality
(start - end)
429 (44 - 472)---
definitionCHROMAT_FILE: MSMg01no444_p18.b1 PHD_FILE: MSMg01no444_p18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:03 2005CHROMAT_FILE: MSMg01no444_p18.g1 PHD_FILE: MSMg01no444_p18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGATCCGCGGA
ATTCAGAGAAGCATGCCTTTGCTAAGCAAACCCACGCACAGGAGTTGTGA
TTGTGAGCGGTTTTGAGTGAAGGGCACCATTGCATGCCTGTACACTCACG
TTTCAAAGGACAAAAGTCATGCTAGGGAGCTAGTTCAGCAGGTGAGAGAG
CAAGCATGAGAACCCAAGCTCCAATGCCCAGCACTAGTGCAAACAAGCTG
GGTACAGCTGTACATGCCTGTGGCTCCAGTACCGTGGCTGGGGCACAGAG
ATAGGGACTTTCTGGAAGCCCACCTCACTCCAGGTTCAGCAATGAGCCTG
TCTCAAGGGAATTATGTCGAAAATAATAGATCAAGACAGACAATTACCTC
TACACAGATGTACACACACCCATAATCACACATACACGTGGTCTCGGTGT
CACAGTGGACCCAGACACTGCAAAAGGCACCCAATCTCAGGTATGATGCA
CACCATTGTATCTCCCACTTATGGTAAACGAAGGTTATAAATTTGCGGTT
GGGAAAAAAATTAATTATTCCCCACTTGGACCGGACGGTTATAATTACCA
ATTAACTTCCCGGCGATAGGATTTTTTTTTAACCCTCACAAAACCTTTAT
AATCTCACACCATTTCTTCCTTTTGTTAAAAGAACAACACTCTTTTCCCC
TTTTTTCCCCAATTGACCCCCCTCTGTCTCCTACTTCCCCTTATATTTTT
TTNTAGCCAGCCGGACCTTTACTTNCTTT
TCATTGCTTTGCCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTTACCCCGGAATTCTACGACAGAAACACTGTCTGCAATG
GCCTAGTTTCATACTGTAAGTTATGTTGTATTGTGTTGTTTGAGCGCCTC
GTATCGGTGCCTCCCCTTCCCCCCCCCCTCCCCCCCTCCCCTTTTTTTTT
CTTCCCCCCTCTCCTCTTTCCCCTTCCCCCCCTCTTTCCTCTCCTTCTTC
TCTCTTACCCCTCTCCCCTCTCTTCCCTCCTCCTCCTCCTTCCCCTCTTT
CTTTCTCCTCTCTCTCCTTTTCCTTTTTCTCCTCCCCCTCCCTTTCTTTC
TCCTCTTTTCCTCCCCCCCCCCCCCTTTCCTCCCTCTTCTCTTCTCTCCT
CCCCCTCCTTCCCCTTCCTCTTTCCCCCTCCCCCCCTTTCTCTTTCTCCT
CCCCCCCTTTTCCCTCCTTCCCCCCTCCCCCTTTCCTTTTCCCCTCCTTT
TTTCTCCCCTTTTCCCCTCCCCCTTTTTCCCTCCTCCTCTCTCTTTCCCC
CCCCCCCTTTCCCTCCCTTTCTTTTTCTTTTCCCCTCCCCTCTCCTCCCC
CTCCTTCCCCCCCCCCCCTCTCCCCTTCCCCCCTCTCCCTTTTCCCTCTC
CCCCCTTTCTTCTTCCCTCCTTTCCCTCCCTCTCCCTCCCCTCTTCCCTC
CCCCTCCTTTCTCTCCCCTTTCTTTTCCTCTTTTCCCCCCCCCCTCCCTC
TCTCCTTCCTCTCCCTTTTTTTCCTTCCTCCCTTCTCCCCTCACACTTTT
TCCTCCTCTCTCTCTTTCCTCCCTTTTCCTCCCCCTCTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_p18.b1 MSMg01no444_p18.b1 CHROMAT_FILE:
MSMg01no444_p18.b1 PHD_FILE: MSMg01no444_p18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:03 2005
         (429 letters)



>mm_chr1_179414460_179415288
          Length = 829

 Score =  609 bits (315), Expect = e-178
 Identities = 324/327 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcagagaagcatgcctttgctaagcaaacccacgcacaggagttgtgattgtgagc 65
           |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gaattcagaggagcatgcatttgctaagcaaacccacgcacaggagttgtgattgtgagc 268

                                                                       
Query: 66  ggttttgagtgaagggcaccattgcatgcctgtacactcacgtttcaaaggacaaaagtc 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ggttttgagtgaagggcaccattgcatgcctgtacactcacgtttcaaaggacaaaagtc 208

                                                                       
Query: 126 atgctagggagctagttcagcaggtgagagagcaagcatgagaacccaagctccaatgcc 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 atgctagggagctagttcagcaggtgagagagcaagcatgagaacccaagctccaatgcc 148

                                                                       
Query: 186 cagcactagtgcaaacaagctgggtacagctgtacatgcctgtggctccagtaccgtggc 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 cagcactagtgcaaacaagctgggtacagctgtacatgcctgtggctccagtaccgtggc 88

                                                                       
Query: 246 tggggcacagagatagggactttctggaagcccacctcactccaggttcagcaatgagcc 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87  tggggcacagagatagggactttctggaagcccacctcactccaggttcagcaatgagcc 28

                                      
Query: 306 tgtctcaagggaattatgtcgaaaata 332
           |||||||||||||||| ||||||||||
Sbjct: 27  tgtctcaagggaattaggtcgaaaata 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 829
Length adjustment: 9
Effective length of query: 420
Effective length of database: 820
Effective search space:   344400
Effective search space used:   344400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)