Query= MSMg01no445_a12.b1 MSMg01no445_a12.b1 CHROMAT_FILE:
MSMg01no445_a12.b1 PHD_FILE: MSMg01no445_a12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:06 2005
(244 letters)
>mm_chr1_160535981_160536625
Length = 645
Score = 437 bits (226), Expect = e-127
Identities = 241/246 (97%), Gaps = 3/246 (1%)
Strand = Plus / Minus
Query: 1 actccactgtcatcaggaaagcagccacataactgttaatgcttgggagatgtctgtcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 actccactgtcatcaggaaagcagccacataactgttaatgcttgggagatgtctgtcta 386
Query: 61 tgcctactcacaaataattcgtcccatagtggaaaaggaagaataacgtatgtattttct 120
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 385 tgcctactcacaaataattcatcccatagtggaaaaggaagaataacttatgtattttct 326
Query: 121 agctgagtcatgtctttctttctcagagtgtccttgacgtgcagtcaggtttattttact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agctgagtcatgtctttctttctcagagtgtccttgacgtgcagtcaggtttattttact 266
Query: 181 atcatttttggaatg-tgtttatactaaatggatttttttt-caaataaagtatctgact 238
||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 265 atcatttttggaatgct-tttatactaaatggatttttttttcaaataaagtatctgact 207
Query: 239 acattt 244
||||||
Sbjct: 206 acattt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 645
Length adjustment: 9
Effective length of query: 235
Effective length of database: 636
Effective search space: 149460
Effective search space used: 149460
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no445_a12.g1 MSMg01no445_a12.g1 CHROMAT_FILE:
MSMg01no445_a12.g1 PHD_FILE: MSMg01no445_a12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:06 2005
(387 letters)
>mm_chr1_160375879_160376664
Length = 786
Score = 694 bits (359), Expect = 0.0
Identities = 380/387 (98%), Gaps = 1/387 (0%)
Strand = Plus / Plus
Query: 1 acaggctctagttttgcacaaggtacaattaataaaatgggaagagaggggaagtcataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaggctctagttttgcacaaggtacaattaataaaatgggaagagaggggaagtcataa 260
Query: 61 gagaagcaaaaattgaggtcagatgtaattttntggagaagatggcattgaggataacgt 120
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 261 gagaagcaaaaattgaggtcagatgtaatttt-tggagaagatggaattgaggataacgt 319
Query: 121 ttagcattattttagaccaaggtggaggaaacagtggagaggcctggaataaaagagacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttagcattattttagaccaaggtggaggaaacagtggagaggcctggaataaaagagacc 379
Query: 181 taacaatacacatcctgtggaggtggcaagcagagtatcaaggatacagtgtttgagcta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 taacaatacacatcctgtggaggtggcaagcagagtatcaaggatacagtgtttgagcta 439
Query: 241 ttcatgtgcacaagcagagctacctccctctgacacagacaggattcaaaaggagaagtg 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 accatgggcacaagcagagctacctccctctgacacagacaggattcaaaaggagaagtg 499
Query: 301 aaaacatgaagagtcttaaaccatgcggagcccagatactaacagagctcatcttttcta 360
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 500 aaaacatgaagagtcttaaaccatgtggagcccagatactaacagagctcatcttttcta 559
Query: 361 taggtagaattggattgagataatagt 387
||||||||||||| |||||||||||||
Sbjct: 560 taggtagaattgggttgagataatagt 586
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 786
Length adjustment: 9
Effective length of query: 378
Effective length of database: 777
Effective search space: 293706
Effective search space used: 293706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
