BAC Information

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BAC

Clone NameMSMg01-445C13
Chromosome1 (Build37)
Map Location 160,649,902 - 160,650,139
singlet/doubletsinglet
Overlap genePappa2
Upstream gene6430517E21Rik, Astn1
Downstream gene4930562F17Rik, EG240853, LOC664972, Rfwd2, EG620484, Tnr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445C13.T7 (MSMg01no445_c13.b1)MSMg01-445C13.TJ (MSMg01no445_c13.g1)
ACCAG534155AG534156
length7391,233
length of high quality
(start - end)
242 (66 - 307)---
definitionCHROMAT_FILE: MSMg01no445_c13.b1 PHD_FILE: MSMg01no445_c13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:16 2005CHROMAT_FILE: MSMg01no445_c13.g1 PHD_FILE: MSMg01no445_c13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTGCGGAGGTGCGCGGAATTCTGTC
TCATTGCTATATAACAAGAAAAATGCATGTGGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTACTGCACATGTATCAGAGGAATCAAACTTAGTACAGAAA
TCAATCTTTCTGAACACCGAGGAGAACTAATGTTCATATGATGACTTTTT
GTTCTATAAACACCTGCATTTTTTAGGGTTTTTTTTTCTTGTCAGCATGA
TATAAAATGAGATTGAAAAAGTGACCTCTAAGAAGTGAGATTCACATTTT
TGAAATTTACTCCCTTACAGAACATTCTAGATGGGGAAAGCTACACAGGA
CTGATTTCTTCCCACCCCCTTCTCTCAAGAAGTAGCCTGAAGAGAGGAAT
TGTATACTGAATCTCACACCTTCAGCTGTTGAGCTGAAAGTCCACTCTAC
CCCATCTTTGAATGCTTTCAAATATTGAACCAAGCAGTAATTTTTCTTTT
CCCCCCTTTTCTTTTGTAGCTCTTGATTCAAATAGTCTTCCCAGCTTCAT
GCTGCTAGAGGATACTCTTCTTCGTTGACAGTTTTAGCGTCTGTCTTATA
TCTTTTTTTTTCTCCTCCTTTTTTTTTCAGCCCTCTTTTTTTTTTTTTCT
GCTCTTCTTTTTGCGCCCCTTGATTGTTTTTCTCCTTTTCTCTACCAATC
TCACTCTATTTCCCCTTTCCCCCTCCCTGTTGGACTGTG
TCCTTTTCCGCTTCTCTGTGGTTTGCTACGTTTCTCTCCTCTGTGTTTGG
GTGGTCACCACTATTTTGTCTTCCCCCCGCAAAATTCATCAAGCCTTGCC
GATGTCGTTAATTTATGGCGCCCGCGTCGCCGTGACCCACTCGCCGCCCG
ATGCTAACGAGGTGGTGGAGAGGATTTTATCCGGAGCAATATAGCCTATA
GAGAGTAGGCGACCGCGCCACATCAGTATATAAGAAGCCAACACCCTCCC
GCGCCACAGAATTAAATCAGCACGCAAGAAAATAATATATCACAGTACAC
CGCGTTCGACGAATGCTATGCACATTGCGTATACTGACGGCATGAGCCGG
CGATGGCCGCTGTGTGACCGTCCGTACTGATGCATTGTCTTCCGGTAATT
AGTGTCTATCTGTGCTGAACACGCACGTGAGCGCGCCGTAGTATTGTATG
CTGACACCCTCTAAGTCCGGCTATAACCACGAGTCATGACATTAGTTAGA
ACATAGCGAGGCGTGAGAAATCGAAGATTATGTGCTCGCTCGCACTTCGC
GCATAATGATACTGAATTTTGTTAGTATCGTCGTGTGTGGTTGACGCGAT
AGTATTGTATGTGTGTCCTTGTCGGCTCTGACCGATTAGCGCGTATATAT
TCTAGAAAGCACGCGCCGCACGTCGCGACGCTGCCGGAGCAATGACATGA
TATCTCATGATGTGATATATCTATACCTGCGCGTAGACAGAGCTGGCTCG
GTGCTACGGCGGGCATCCTGACTTGCGCGCAGTTCCTCGTGTGAGATATA
CTATTGATTACCTCACCTCTTAATATACCTCTCCTCGTCTGCCGTACACT
CGAAATGATGATAAATATATTAATANACGATACATAACAGTGTCACTATG
CGACGCCATGTCAGATAGACATCCCCGCTTTAGGTCCAGGTGNTGTCTAC
GCCTCACGCGCAGACCGCCGATATGTCATGACTTCTTATAGTTCTCCGTG
TATGTCTATTGTCGTATGGGTCCCACCGATTGCAGTCGATATCACGCGAC
GTTGACACACCGCGCCGTGTATACCCTGTTCTAGCCGCTCATAGCCAGCC
ATCTAGCGTATTTATATATGTAGTCGTTGTGTCGCACACGCGATAGCACG
CGCCTGTTCCAATATATCTTAGTGTGCGCAACGCATGAGAGTAGTGACAC
TGTATTGAGGGCGCATGCGCCATCTCGCCCGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_c13.b1 MSMg01no445_c13.b1 CHROMAT_FILE:
MSMg01no445_c13.b1 PHD_FILE: MSMg01no445_c13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:16 2005
         (242 letters)



>mm_chr1_160649656_160650297
          Length = 642

 Score =  429 bits (222), Expect = e-125
 Identities = 235/240 (97%), Gaps = 2/240 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagaaaaatgcatgtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtactgcacatgtatc 60
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 aagaaaaatgcatgtg--gtgtgtgtgtgtgtgtgtgtgtgtgtgtactgcacatgtatc 427

                                                                       
Query: 61  agaggaatcaaacttagtacagaaatcaatctttctgaacaccgaggagaactaatgttc 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 426 agaggaatcaaacttagtacagaaatcaatctttctgaacacctaggagaactaatgttc 367

                                                                       
Query: 121 atatgatgactttttgttctataaacacctgcattttttagggtttttttttcttgtcag 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 atatgaagactttttgttctataaacacctgcattttttagggtttttttttcttgtcag 307

                                                                       
Query: 181 catgatataaaatgagattgaaaaagtgacctctaagaagtgagattcacatttttgaaa 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 catgctataaaatgagattgaaaaagtgacctctaagaagtgagattcacatttttgaaa 247


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)