BAC Information

Click to search

BAC

Clone NameMSMg01-445L08
Chromosome1 (Build37)
Map Location 149,156,860 - 149,157,287
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383571, B830045N13Rik, LOC100043240
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445L08.T7 (MSMg01no445_l08.b1)MSMg01-445L08.TJ (MSMg01no445_l08.g1)
ACCAG534575AG534576
length7591,066
length of high quality
(start - end)
429 (67 - 495)---
definitionCHROMAT_FILE: MSMg01no445_l08.b1 PHD_FILE: MSMg01no445_l08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:00 2005CHROMAT_FILE: MSMg01no445_l08.g1 PHD_FILE: MSMg01no445_l08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
TTGATTACAATAAAATGGTAGACCTACCTTAAATTGGATAGGGAGTGCAG
ATGTCAGATGTTGTTTCACAAATTTACCTGCAGTAGTACCATTTTGATTA
TTCCATTCTTTTTATGAGACTATTCAACATACATTAGCTAACTGACTAGA
TTATAGGCTCAATTTTTTTGTCTAAAAATGTATTTGCAAATACTAATTTA
AAATTAAGAGTCCTTATATAAATTTGTAAGAAGATATTCTCTTTAATTTT
CTTGTATTTTTGTTGTATTATACATTTATGATGGTGAAAATGGTATTTGA
AGATTTAAAAAGTAATGTAACATCTAATCACAGAAAATGTAAAATTTATT
ATTGTTATGATAACATATAATCTATAGTTTTCCATAAAATGACCTTATAG
AAATTTAAACTATAGTAATATTCATTTATCTTTAAATTATTCAAAATAAC
TAAACAATCGGAGTAGAATTCAGACCCCTGCCTAAATAAAGACACTTATT
TAAACATGGATGATGCACATTTTGGGACTCCCTCATTACAGGGCATGTTC
GTTCATGCTGGATGAATTCTTTACACATTTATCTAACAGGGTTATGTTTT
TTGTCTTTACACCCTGAACCTTCCCCCGGATTGGTGGGCTACACCATAAT
GACTGCTATCACACGCTCCCATTTTCACGGGGCGGCCATTACTCTCCCGT
GTCTTGTCC
TAAACTAGCAAATCCCGNTTGGNCTATCCTTTTTCTCATAAGAGTAGGTG
GGAGTTAAGAAATGTTATCTCATTGATATATCATAATTTACAGCCCGCCA
ACGAAGTATACACAGCCAATACGAAACAAACACACCAACGGTGATCAGAT
TAGCTTTAGATCGCATTATAACGCCGGCGTATATAGGACCACGAAGAGAG
CCTGGATATAGGGTGCAACCAGTAGTGTACCCGAAAGAATATTCAGGCCG
GCCCGATTGGTCTGTGTCGCTGTTTCGTTCGTCCGTATCGATTGAGAGTT
GTATAAGCAATCTTAATTACAACGCTTAGAGTGTGATATAGTATATTATT
TTCACAATACACCTATAGGTCACACCGCATCCCTAAATAATAAGACTAAC
AGAAATATCAGTAAGATAGGGTGTGAAGAGGTTGTGTTGTCCGCCCAATA
TACACATCAATTTAAGAAAATATACACAATAAACTACACATCACAACACC
AGAAGGGGCAGAAAATAGAGAGCGAGATTAAATAACAAGACAATGGGGAG
CATATTGGGGAATGAAATACTCACACTTAGCGCCTCGCTCCCCACTGTCT
AATCAACCCCCTATACAAGTAGTCACCCCCAATTCTCCCCTGTGCCCCCC
CACCTGATCTTGATAGCCTCTGAACGTGATAGATATGTTAACTAATACCA
ACAAAAGAACAAGGAGCGTCGTTGCTCCCCGCGTGTTTACCCGCCTAATA
CACATTCTTATTCGCCGCTCACAGCGCTCACCAGTAGAAACGCCCCCGTA
AAAAGCTGCGAGTACGAATTGTATATACACCCGCAATATAACACAAATAT
AAATCATTCCGCTATGTCGACTACGTGTGCCGCATCATCATAAACTATTA
CAGTAAAATATGCGCGACGGATATAAGCTGTCGTGATGTGGCTGTATCAC
TCTGACTTCTGTCCCGCCTCGCTCCGCAGCTGTATTATCCATAATATATG
CATAATTAGACCTCGTTGTCATTAGAATTTCTATCCGCCCTATTGTTACT
TGACGCGCCTAGAATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_l08.b1 MSMg01no445_l08.b1 CHROMAT_FILE:
MSMg01no445_l08.b1 PHD_FILE: MSMg01no445_l08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:00 2005
         (429 letters)



>mm_chr1_149156660_149157487
          Length = 828

 Score =  791 bits (409), Expect = 0.0
 Identities = 424/429 (98%), Gaps = 1/429 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggtagacctaccttaaattggatagggagtgcagatgtcagatgttgtttcacaaattta 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ggtagacctatcttaaattggatagggagtgcagatgtcagatgttgtttcacaaattta 569

                                                                       
Query: 61  cctgcagtagtaccattttgattattccattctttttatgagactattcaacatacatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 cctgcagtagtaccattttgattattccattctttttatgagactattcaacatacatta 509

                                                                       
Query: 121 gctaactgactagattataggctcaatttttttgtctaaaaatgtatttgcaaatactaa 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 508 gctaactgactagattataggctcaa-ttttttgtctaaaaatgtatttgcaaatacaaa 450

                                                                       
Query: 181 tttaaaattaagagtccttatataaatttgtaagaagatattctctttaattttcttgta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tttaaaattaagagtccttatataaatttgtaagaagatattctctttaattttcttgta 390

                                                                       
Query: 241 tttttgttgtattatacatttatgatggtgaaaatggtatttgaagatttaaaaagtaat 300
           |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 389 tttttggtgtattatacatttatgatggtgaaaatggcatttgaagatttaaaaagtaat 330

                                                                       
Query: 301 gtaacatctaatcacagaaaatgtaaaatttattattgttatgataacatataatctata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gtaacatctaatcacagaaaatgtaaaatttattattgttatgataacatataatctata 270

                                                                       
Query: 361 gttttccataaaatgaccttatagaaatttaaactatagtaatattcatttatctttaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gttttccataaaatgaccttatagaaatttaaactatagtaatattcatttatctttaaa 210

                    
Query: 421 ttattcaaa 429
           |||||||||
Sbjct: 209 ttattcaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 828
Length adjustment: 9
Effective length of query: 420
Effective length of database: 819
Effective search space:   343980
Effective search space used:   343980
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)