BAC Information

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BAC

Clone NameMSMg01-445N13
Chromosome1 (Build37)
Map Location 53,247,830 - 53,248,278
singlet/doubletsinglet
Overlap genePms1
Upstream geneGls, LOC546735, Nab1, LOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik, Inpp1, Hibch, 1700019D03Rik, Gdf8, 1700019A02Rik
Downstream geneLOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858, EG627866, LOC100042162, Dnahc7, Stk17b, Hecw2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445N13.T7 (MSMg01no445_n13.b1)MSMg01-445N13.TJ (MSMg01no445_n13.g1)
ACCAG534680AG534681
length739763
length of high quality
(start - end)		459 (60 - 518)449 (67 - 515)
definitionCHROMAT_FILE: MSMg01no445_n13.b1 PHD_FILE: MSMg01no445_n13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:12 2005CHROMAT_FILE: MSMg01no445_n13.g1 PHD_FILE: MSMg01no445_n13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTCTTTAT
ATATTCTGGATGTTATATCCCCTCTATCAGATGTGGGGTTAGTGAAGTTT
TTTTCCCAATCTGTAGGTTGCTGATTCGTCTTATTGACTTTGTCCTTTGC
CTTACAGAAGCTTTCCAGTTTCCTGAGGTCACATTTATCATTTCTTGATC
TTAGAGCACAAGCCATTGGAGTTCTGTTTAGGAAATTTCCCCCTGTGCCA
ATGAGTTCAAGGCTCTTTCCCACTTTCTCTTCTATTAGATTCATTTTATC
TGGTTTTATGTTTAGGTCTTTGATTCACTTGGACTTGAGCTTTGTGCAAG
TTGACAAATATGCATCTATTTTCATTTTTCTACATACAGACAACCAGTTA
GACCAGCACCATTTATTGAAGATGTTTTCCTTTTTCCATTGTATATTTTC
CGCTTCTTTGTCAGAGATCAAGTGTCCATAAATGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTNNNNNNNNNTTNNNNNTNTNTTTTTTTTTTTTN
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTNNTTTTNTTTTTTTTTTTTTTTTTTNNTNNN
TTTTNTTTTNTTTTTTTTTNTTTNTNTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTNNTTTTTTTTNTNTTTTTNT

TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAGTGGATTCAGCGGTGCTTAGAACCCCTTGGGAG
CTTTGTCTTGTGGAAATTCCCAGCCTGTTGCCAGGGCGATTCAGCAGTGA
TAGTTTCAAGAAACTCCAGAGACATCTTTCTTAAGAGCAAAAAAACATGT
GGTCAAGTAATAAGGTTTTAGACATAATGGAGGAAAAAAATCAGTTGGGA
GTGAACTGAAACAGTTTTGCTAATGTGTACCAGGTTAGAGTAACTAGGCA
TGTTTGTTATGGAGAAGTTAAAAACAATCAGCCAGAGACAAAAGCAGGGC
GGTCTGTGAGGTAGAGTCCAGCCTGGTCTACTGAATGAATTCTAGGATAG
CTAGGGCTACCCATAGAAGCCCTGTTGGGAAAAACCAAAAGAGAGGGTTT
GGGGTAAATATTCCAGTGTGACAGAGATGTTTTTGAAAGGAGAAACATAA
TAGTCTCTGAATCAAGAGTGAAAAATAATTTTTCTTTGGNTTTTGTTTTG
TTTTGGTTTCACCATATTTTCTTCTTCTTATTTGGTTTGAGATTAAGATC
TCACTATGTAGNCCAGCCTGGGCCCAAACTCAACCGGTCTTTTTGTACAC
TAATAAGGCTAGCTAAAAGGGAAATTTTTCCTTATAATAAAAAAAGATTG
GGTTTTTTTTGGGGTAAAAAAAAAAAATTTTTGTTTTTTAACGGAGAGTC
CGGAAGGTTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_n13.g1 MSMg01no445_n13.g1 CHROMAT_FILE:
MSMg01no445_n13.g1 PHD_FILE: MSMg01no445_n13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:12 2005
         (449 letters)



>mm_chr1_53247811_53248659
          Length = 849

 Score =  806 bits (417), Expect = 0.0
 Identities = 441/449 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtggattcagcggtgcttagaaccccttgggagctttgtcttgtggaaattcccagcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 agtggattcagcggtgcttagaaccccttgggagctttgtcttgtggaaattcccagcct 409

                                                                       
Query: 61  gttgccagggcgattcagcagtgatagtttcaagaaactccagagacatctttcttaaga 120
           ||||||||| | | |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 408 gttgccaggacaactcagcagtgatagtttcaaggaactccagagacatctttcttaaga 349

                                                                       
Query: 121 gcaaaaaaacatgtggtcaagtaataaggttttagacataatggaggaaaaaaatcagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 gcaaaaaaacatgtggtcaagtaataaggttttagacataatggaggaaaaaaatcagtt 289

                                                                       
Query: 181 gggagtgaactgaaacagttttgctaatgtgtaccaggttagagtaactaggcatgtttg 240
           ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 288 gggagtgaactgaaacagttttgctaatgtgtaccaggttagaataactaggtatgtttg 229

                                                                       
Query: 241 ttatggagaagttaaaaacaatcagccagagacaaaagcagggcggtctgtgaggtagag 300
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 228 ttatggagaagttaaaaacaatcagccagagacaaaagcagggcggtccgtgaggtagag 169

                                                                       
Query: 301 tccagcctggtctactgaatgaattctaggatagctagggctacccatagaagccctgtt 360
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 168 tccagcctggtctactgaatgagttctaggatagctagggctacccatagaagccctgtt 109

                                                                       
Query: 361 gggaaaaaccaaaagagagggtttggggtaaatattccagtgtgacagagatgtttttga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 gggaaaaaccaaaagagagggtttggggtaaatattccagtgtgacagagatgtttttga 49

                                        
Query: 421 aaggagaaacataatagtctctgaatcaa 449
           |||||||||||||||||||||||||||||
Sbjct: 48  aaggagaaacataatagtctctgaatcaa 20


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 849
Length adjustment: 10
Effective length of query: 439
Effective length of database: 839
Effective search space:   368321
Effective search space used:   368321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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