BAC Information

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BAC

Clone NameMSMg01-445O22
Chromosome1 (Build37)
Map Location 96,783,704 - 96,784,193
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041596, EG666009, EG619597, Neu4, Pdcd1, LOC666012, LOC666025, LOC100040685
Downstream geneLOC383603, Tmem157, LOC100041686, Rnu7-ps2, St8sia4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445O22.T7 (MSMg01no445_o22.b1)MSMg01-445O22.TJ (MSMg01no445_o22.g1)
ACCAG534746AG534747
length758780
length of high quality
(start - end)		496 (38 - 533)458 (67 - 524)
definitionCHROMAT_FILE: MSMg01no445_o22.b1 PHD_FILE: MSMg01no445_o22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:19 2005CHROMAT_FILE: MSMg01no445_o22.g1 PHD_FILE: MSMg01no445_o22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCNGGATTCTAT
CAGTATTTAAAAATATAAAGTTTAAGAGAAACCTTGTGGGTTTCTAACAA
CAACAATTCCATCTGGAAAATACAAATTACTAAACAAATCATTTGATGTA
ACTAGTTATTAGCATTAAAATTATTGTGATTAAGAACTAATCTATTCATT
GTTAGAATCTCAATCCTTCTGAATTGCTATTTCAAGAACTCATTTGAAAA
ATAATAGCTATTGAATGTAATATTGGGTATAAAATTATGCTAGTCAAATG
AAAGTTTGTCTTAAGAAATGCTCTAATTACCTAGCCTATTTTTCCTAAAT
TTTTAATTTATGAAATGGATTGTCCAAATTCACTCTAATGTTTAACATGA
ATCTAAAACTTTCGAAAATTAGTTTGTTTTATTTTGTTTATGGGAAGAAG
CCCCCTCTGAGAACTACTGGTAAGTATAGAAATAAGAGTGACAGGTTCTC
TTTTATGGGAATATTGGAGAACTATCATCAAGATTTGTTATCAAATACCC
TTAAATCTTTTACCTTGAAACACCATATATTTTATTGGGGGTCGCTATAG
ATTTATTTGCTATATTTTGTAATGACTCCTTATGATTGTCCCAGCTATTT
TCTATTCAGAAATTTATTTTTTTTATTCTGACCAAAATAAATAAAATTAT
TACTTTCATGGGGAGAGGTTTTTTTTTAATCCGAGAATGCTATGGCCTCA
TCTCTTTG

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTGACATAGCTAAGACTTTGCCAGTGTTCCAACGT
CCCAGAAAAACCTTGAAGCCAACAAACTGGGAATTCAGTAGGAATTCAGT
GAGAAGGTTACCTATTCAGTAACATTCAAAATTACTTCTAATAGAGACAG
TGAAACTAATTAGGCATTACAAAGAACAGAGAATAACTCAGGCCTAGTCT
GCAGAGTGTTTACTTGAGGCAGTAGCCAGTCTCACCCATACACAATTGCC
TAGCTAATAGGTGGGTTTACTATGAAAGAGTTAGGGAATCCCACTGAGAC
AGGAACCTTCACTACAGCCAGCTATAGCAGGCTACATTGCATATTAGAAG
CAAGTTGGTGAATTCTTCTGACAAATGGAGATTCTCCACAGATACTTAAA
AGAACAGCTAAGCTACACTCATACAAGAATTTATCAGGGCCCAGGAAATA
GGGGGGTTGTGGNATTGCATTATTCATGAGAAAGGCTGCTAGAGCAGAAA
CCTCCTGGTGGTAGCTTTCTCAAGGTCCAGGGGAGAAGCTCAAATTGTGG
ACAAGGTGGGAAAAACTTTGGCTTCATTTAGCTGACCCAATTGCGGGTTT
GTTTTTTTTTTTTGGAAAATTTTTCCCGGTTGCCAAAAAACTATCTTGAG
AGATTCTCCCTTGTTTTTGGGCGCAAGCTTTCATGTGATTTGTTCTAATT
GGTGTTTCACTCTCCCGTGATCTTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_o22.b1 MSMg01no445_o22.b1 CHROMAT_FILE:
MSMg01no445_o22.b1 PHD_FILE: MSMg01no445_o22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:19 2005
         (496 letters)



>mm_chr1_96783498_96784393
          Length = 896

 Score =  917 bits (474), Expect = 0.0
 Identities = 486/490 (99%)
 Strand = Plus / Plus

                                                                       
Query: 7   attctatcagtatttaaaaatataaagtttaagagaaaccttgtgggtttctaacaacaa 66
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 attctatcagtaattaaaaatataaagtttaagagaaaccttgtgggtttctaacaacaa 266

                                                                       
Query: 67  caattccatctggaaaatacaaattactaaacaaatcatttgatgtaactagttattagc 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 caattccatctggaaaatacaaattactaaacaaatcatttgatgtaactagttattagc 326

                                                                       
Query: 127 attaaaattattgtgattaagaactaatctattcattgttagaatctcaatccttctgaa 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 attaaaattattgtgattaagaactaatctattcattgttagaatctcaatccttctgaa 386

                                                                       
Query: 187 ttgctatttcaagaactcatttgaaaaataatagctattgaatgtaatattgggtataaa 246
           ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 387 ttgctatttcaaggactcatttgaaaaataatagctattgaaggtaatattgggtataaa 446

                                                                       
Query: 247 attatgctagtcaaatgaaagtttgtcttaagaaatgctctaattacctagcctattttt 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 attatgctagtcaaatgaaagtttgtcttaagaaatgctctaattacctagcctattttt 506

                                                                       
Query: 307 cctaaatttttaatttatgaaatggattgtccaaattcactctaatgtttaacatgaatc 366
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tctaaatttttaatttatgaaatggattgtccaaattcactctaatgtttaacatgaatc 566

                                                                       
Query: 367 taaaactttcgaaaattagtttgttttattttgtttatgggaagaagccccctctgagaa 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 taaaactttcgaaaattagtttgttttattttgtttatgggaagaagccccctctgagaa 626

                                                                       
Query: 427 ctactggtaagtatagaaataagagtgacaggttctcttttatgggaatattggagaact 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ctactggtaagtatagaaataagagtgacaggttctcttttatgggaatattggagaact 686

                     
Query: 487 atcatcaaga 496
           ||||||||||
Sbjct: 687 atcatcaaga 696


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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