BAC Information

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BAC

Clone NameMSMg01-446F04
Chromosome1 (Build37)
Map Location 19,347,112 - 19,347,636
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383499, EG435611, LOC100040189, Tcfap2d, LOC100040413, Tcfap2b, LOC100040198, LOC226901
Downstream genePkhd1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446F04.T7 (MSMg01no446_f04.b1)MSMg01-446F04.TJ (MSMg01no446_f04.g1)
ACCAG535046AG535047
length1,138732
length of high quality
(start - end)
---527 (87 - 613)
definitionCHROMAT_FILE: MSMg01no446_f04.b1 PHD_FILE: MSMg01no446_f04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:49 2005CHROMAT_FILE: MSMg01no446_f04.g1 PHD_FILE: MSMg01no446_f04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGAAGCAAGAGATAGAAAAGCCGGATCACATCTTTATCTATCGAGGAGAG
ACGAGGGACAAAAAGACAGTTCTCGCAGTGTATTGCGCGGTAATGCTTGA
TGCTAAAGACAATTCGCAGTATCACACACAGATCACGGCATAACACGAAC
GTCGCGACTAGATATTCGTAATATATATAGATCGCGGGAAAGAGAGATAA
GGTGTGCTACCGCGTGCGTGATAGTGGATGAGCGCGCGTACCACTCCATC
TCCTCTCTCGCATTGATATTGCTGCGAAGAAGCAAGGTAGAGGAGAAGTA
TAGCGAGTCGCTATCGCCTTAGCGCGAGAGCGTACGAGAGCGACCCGTAA
TGACGTATACCGTTATTCTCCATATTCGCTATACGCACGGAGGAGTTCAT
GACGCGTNGCTTACCGACGATGCGAAGTAATATAGAACACGCGTACGTGA
GCAGATATGATTCGCTCGTCTGTAGGAGCTCGATCTCCATCTTATACTCC
TTTCTCATTACATCGTACGCATTACCGATGATACTACTCACTCTAAACGC
TACTGTCTCGTCTATTATATAATTCACAGGCCGCCTGCTATAATCATTAT
AACTCTCATCATGATCGCGTCAATAATATGACACACTACAATTATGACTA
ACGCCGTATCCTCATGTAGTAGAAGCAGTGTGCTAGCACTGATACGCGAT
CCGCGTGTGGTGTCGCCCACCCTCTGTCGGCGCGCTGCCATTATATGTCG
CGAGCTCAGATCTCCACGACCTCGCCCCACTACGTCTAACGCATGTCATC
GCGAGCACACGAGAGCCTGTCCGCACGTCGCAGCTNGTCGACACTCTCAC
TACACATACTGCCCTCAGCACTTCGCACACATCTCTCTCGCTACACAGCT
CCGTCGTTCACTCGGCGCGAACGATATAAGTTATTCGCGCTGCAGTCACA
GGCGCTNGAGGTCTGACTCGCGCCAACCGTCTCCCACACCTCTTATTATC
CTTCTGATCTATCGATGCGTCTTAGGCGTCCCGCCACCGAACCGCATCAC
GCGCCACTAGTCTTAGTAGCGAGTGTTCTGCTGATTCTATCATATAGGAC
GCCGTTGATAGCGACACGACATAGTTTCTGCTCCTGTG
GCGAATCCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAACACATAAAGTC
TATTGGGACCAAACCTGTTTAAATTACCATAAATTCTCAAAAGTTGTTTT
ATGGAGTTTGTATGTATTCCATGGCACAAATACACAGCCCTTTTCTCAAA
TCCACCATGTGCATATATTACCAGTAACAAACAAACCAAATTTGAAAGTT
AAGATCTAAATTACACAATACTATTATTTTCTAAACTAGTAGAGATGATA
ATTTTTACCAGTTTATTTATATATATATATGTTTATATATTTGCATACAC
ACACACACACACACACACATATATGATTTGTGTGGAGTCTGAAAAGATGG
CTCTGTGGTTCAAAACATGCACTGCTCTTAGAAAGCATCTAAGTTTAGTT
TCCAGCACCCGCATGAATCTTTCAACAACATTTTATAGTTACAGCTCCAG
AAGATCTCACATTATCCCCTGGCCTCCACAGGCACCTGTACACATGTGCA
CATACATAATCCTTATATGTACGTAATTTTAAAATAATAAAGATAAATCT
GAAAAAATAATTGTCAGTCTAGATAAGGGGCTCTGAGTTTATAATCATCA
GAGCTGGTTTAAATCTCGGGACTATTACTTGCTTATTATATTATTTGTGA
ATAATACCTAAAACCTCTTGGCTTCTGTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_f04.g1 MSMg01no446_f04.g1 CHROMAT_FILE:
MSMg01no446_f04.g1 PHD_FILE: MSMg01no446_f04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:49 2005
         (527 letters)



>mm_chr1_19346912_19347838
          Length = 927

 Score =  946 bits (489), Expect = 0.0
 Identities = 517/529 (97%), Gaps = 6/529 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaacacataaagtctattgggaccaaacctgtttaaattaccataaattctcaaaagttg 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 aaacacataaagtctattgggaccaaacctgtttaaattaccatgaattctcaaaagttg 260

                                                                       
Query: 61  ttttatggagtttgtatgtattccatggcacaaatacacagcccttttctcaaatccacc 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 ttttatggagtttgtatgtattccatggcacaaatacacaccccttttctcaaatccacc 320

                                                                       
Query: 121 atgtgcatatattaccagtaacaaacaaaccaaatttgaaagttaagatctaaattacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgtgcatatattaccagtaacaaacaaaccaaatttgaaagttaagatctaaattacac 380

                                                                       
Query: 181 aatactattattttctaaactagtagagatgataatttttaccagtttatt--tatatat 238
           |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 381 aatactattattttctaaactagtagagatgataatttttaccagtttatttatatatat 440

                                                                       
Query: 239 atatatgtttatatatttgcatacacacacacacacacacacacatatatgatttgtgtg 298
           |||||||||||||||| |||||||||||||||||||||||||    ||||||||||||||
Sbjct: 441 atatatgtttatatatgtgcatacacacacacacacacacac----atatgatttgtgtg 496

                                                                       
Query: 299 gagtctgaaaagatggctctgtggttcaaaacatgcactgctcttagaaagcatctaagt 358
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 497 gagtctgaaaagatggctctgtggttcaaaacatgcactgctcttagaaatcatctaagt 556

                                                                       
Query: 359 ttagtttccagcacccgcatgaatctttcaacaacattttatagttacagctccagaaga 418
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ttagtttccagcacccgcatggatctttcaacaacattttatagttacagctccagaaga 616

                                                                       
Query: 419 tctcacattatcccctggcctccacaggcacctgtacacatgtgcacatacataatcctt 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tctcacattatcccctggcctccacaggcacctgtacacatgtgcacatacataatcctt 676

                                                            
Query: 479 atatgtacgtaattttaaaataataaagataaatctgaaaaaataattg 527
           |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 atatgtacataattttaaaataataaagataaatctgaaaaaataattg 725


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space:   474089
Effective search space used:   474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)