BAC Information

Click to search

BAC

Clone NameMSMg01-446G07
Chromosome1 (Build37)
Map Location 65,041,331 - 65,041,682
singlet/doubletsinglet
Overlap genenone
Upstream geneKlf7, Ppia-ps1_583.1, LOC100043124, Creb1, 2310038H17Rik, Ccnyl1, Fzd5, 9430067K14Rik, LOC667245, LOC100043141
Downstream gene4921521F21Rik, LOC667276, Cryge, Crygd, Crygc, Crygb, LOC654356, Cryga, D630023F18Rik, Idh1, Pip5k3, Pthr2, LOC100042716, EG628894, LOC100043165, LOC383520, EG667775, Crygf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446G07.T7 (MSMg01no446_g07.b1)MSMg01-446G07.TJ (MSMg01no446_g07.g1)
ACCAG535100AG535101
length735745
length of high quality
(start - end)
247 (66 - 312)393 (70 - 462)
definitionCHROMAT_FILE: MSMg01no446_g07.b1 PHD_FILE: MSMg01no446_g07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:54 2005CHROMAT_FILE: MSMg01no446_g07.g1 PHD_FILE: MSMg01no446_g07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
TGTCAATAGCATGAGTCTAAGGACACGTGGCATTTAAAAATGTATAATGC
CTCATGCTCAGATCGTCATCTCTGTGGTTATTCTTAATGAAAGGGGAAGG
CCTCATTGGACATGGGGGAGGGTAAGAGATGTAAAGCAGGAGCCTGAATC
ATCTGGTACAGCCAGGAAGGAAAAAATGATGAACAGCAAGCTAGCAAACA
AAACGCACAATGGTTGAGCTATCTCAAAGGGACCTGGAGCCAATGCAGAG
CTTAAGTGCAAAGCTGTTTTTCTTGAACAATAATCAACACTGTACACCCC
AAGGTACAAAATAACCACGCATGACTCTACACTGACTAGAATAGCAAACA
AGTTAAAAAAAATAATAAAAAAGAATGAGAGAAAAGGACAGACCTCCCCA
GCAGGACTGCAAACAATTCTGGGCATGCTCTGCTCCCAGGCAGGTGGAAC
CTCTCAATAGAGAGATCCACGTGACTCCTTTCATAGATAACTACCTGATA
GGGAGAAGATATAGTAACTTTACCGCCTAGGACTGTGTCACCTACCCTGC
AGTGCTAAGCCAGGATGGTGCCGTGCTTGTCCCCTGTGTTTCCAATGCCA
GTTTACCTTATTGTTCTTCCCTCCCCAGTCCCATCAGTTTTCAGCGCATT
GTTATTTTCGCTGTTTGTGCCTTTATCAGACTGTN
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGCTAAAACCCAGGGGGGGAATATAATTCTT
TCTACAAGCAATGAAGTTTAACAATTTTCATGGAGGCTACTAGTTTGGAA
TTCCAGAAGTAGCAACAGGTAGTTGTGGAAACAGCAGTGTTTGGAAACCC
TTGGGCTGTTCCCAGCGGTGTACCCTATCCCGGAACACCCCATCTCAGTG
CACTCCACCCCAGTGCCTCCCACCCAGTGCACCCCGTCTCGGTGCACCCC
ATCCCGGAGCACCCCGCCCCCTTACTGTGGCAAAAGCACTCAAAGACTTG
AAGTATCAAAAACAAGCAAGAGAGGAAGCAAATGCTGTGCAGACTTCAAC
CCTGAGAGAGAAGAAAGCCATGAGCTCAGCTGGGGAGACCTAGTAGACAC
CATCCAGTGTGGTCTGTAGTATGTTTTCTGGCAATTTGTATAAGAAAAAT
GGTACAAATGATTAAATTTTCTCCTACAAGAAATCACCTTTTACCACAAA
AATGATAAGAAAAAGAATTCCCCACTTATTTTCCCCTCGCCTATTCTTTA
CGAGCTGTACCCAGCCGATGACTGTACAGGATCCCCCGCTATATACATTG
CTTTATAAATCATTCGAAACTACCATATCCCGTGTCCCACATCTTTTTCT
ACCTCTGTTACGACCCTTTTACCGCCTTTACGCTATATCTGGTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_g07.g1 MSMg01no446_g07.g1 CHROMAT_FILE:
MSMg01no446_g07.g1 PHD_FILE: MSMg01no446_g07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:54 2005
         (393 letters)



>mm_chr1_65041331_65042123
          Length = 793

 Score =  642 bits (332), Expect = 0.0
 Identities = 347/352 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agctaaaacccagggggggaatataattctttctacaagcaatgaagtttaacaattttc 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 agctaaaacccaggggggaaatataattctttctacaagcaatgaagtttaacaattttc 293

                                                                       
Query: 61  atggaggctactagtttggaattccagaagtagcaacaggtagttgtggaaacagcagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 atggaggctactagtttggaattccagaagtagcaacaggtagttgtggaaacagcagtg 233

                                                                       
Query: 121 tttggaaacccttgggctgttcccagcggtgtaccctatcccggaacaccccatctcagt 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 232 tttggaaacccttgggctgttcccagcggtgtaccccatcccggaacaccccatctcagt 173

                                                                       
Query: 181 gcactccaccccagtgcctcccacccagtgcaccccgtctcggtgcaccccatcccggag 240
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 172 gcactccaccccagtgcctcccactcagtgcaccccgtctcggtgcaccccatcccggag 113

                                                                       
Query: 241 caccccgcccccttactgtggcaaaagcactcaaagacttgaagtatcaaaaacaagcaa 300
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 112 caccccgcccccttactgtggcaaaagcactcaaagacttgaagcatcaaaaacaagcaa 53

                                                               
Query: 301 gagaggaagcaaatgctgtgcagacttcaaccctgagagagaagaaagccat 352
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 52  gagaggaagcaaatgctatgcagacttcaaccctgagagagaagaaagccat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 793
Length adjustment: 9
Effective length of query: 384
Effective length of database: 784
Effective search space:   301056
Effective search space used:   301056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)