BAC Information

Click to search

BAC

Clone NameMSMg01-446K19
Chromosome1 (Build37)
Map Location 71,726,386 - 71,726,632
singlet/doubletsinglet
Overlap genenone
Upstream geneSpag16, A830006F12Rik, LOC100043210, EG667884, EG666083, LOC100042804, LOC100042809, Bard1, LOC667900, Abca12, LOC629101, Atic, Fn1, LOC100042814
Downstream geneGabarapl2-ps1_652.1, LOC383528, LOC675667, EG667931, EG433319, LOC667937, LOC100043255, Mreg, Pecr, Tmem169, Xrcc5, March4, Smarcal1, Ankar
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446K19.T7 (MSMg01no446_k19.b1)MSMg01-446K19.TJ (MSMg01no446_k19.g1)
ACCAG535313AG535314
length753765
length of high quality
(start - end)
248 (63 - 310)249 (59 - 307)
definitionCHROMAT_FILE: MSMg01no446_k19.b1 PHD_FILE: MSMg01no446_k19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:16 2005CHROMAT_FILE: MSMg01no446_k19.g1 PHD_FILE: MSMg01no446_k19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCGCTAAACGACTCACTATAGTGCAGAGAATGCGCGGAATTCAATGGGAG
TAGCTTTTTACATGCTTTTAAAATAAATGTTCTTATTCTCTGATGCTAAA
AGTTAAATACACTCAGAAATTTGATGCAAGTGACTCTTAGTCTGCATCGC
TTTCCCTCCCTTTCCACTCACCATGGGAAGCCCCACCAACAGGCCTCCTG
CACTCTGTGAGCCCCTGATGCTAAATATAATTGTCCAAATCAGTTGGACG
ATCTTTATAGGGATCTACAGCTTGGATAAAAATCCATTAATCTGATGCTT
AAAATGGATATATTATTCCGAGGCTCTTGAGACTGACTTCATTAGAACTC
TCCTGATTGACATATTAGAAATGCAAACTCAATTGTGCTTAAACAAAATA
TAATAATTTGTTAAGTCATTAAGTTAGACGTCCAGAGAATGATTTTTTTT
TCCAAGCTGGCTGGGTGTAGAACTCAGAGGACGTATTTAGACCTGAGACT
CTCTAGTTTACAGTTGGGTTTTTGTCTAGACCCTCTTAGGCCAGGTTCTT
CACGGTCAGAGGCAAGGTATCTCCCAGTAGTCTGTCCCTACATTGTTTCA
TCTTAGCAATCCCACATAAAAAGCCAATTGGCTCTTTTAATTTCAGAAAT
ATTTTCAGTATTCAGTGGGCCTACTGTAAATTTGAACCTGGTTGTCGACC
AAATGACCACCAACTACGGCAACTACTATGTTCTTGACCGTCCCCTTCTG
AAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCAGAAATTCCTATTTTTCAATATTCATTCATTTATGAGTTGCAGAGACA
GGGTCTCACTATGTTGACGAGCCTGGCCTTGAACACGTGATCTTCTTGTT
TCATTCTCTCAAGTGCTAGCATTAAAGGCATGCAATACTCTGCCTGACTA
AGTATCTTGTATTCTTCAACTGTGTTGATGAGATACCATGATCAAGGCAA
CTTATAAAAGGAATTATTTAATTTGGGGGCTTGCTTACAGTTTTAGAGGA
CTGGTCTTANGTTCATCATGGCAGGAAGCAGACAGGAGTGGGGCTAAAGC
TTTATACCCTGATCCATAGGAAGCAGGTAGAGAGAGATACTGGGCCTGGG
GTGGGCTTTTGAACCCTCAAAGCCTACTCCAAGTAGCACACCTCCTCCAA
TAAGGACACACATCCTAATCCCTGTCTAACAGTTCATCAATTGGGGACTA
AGCCTGCAAATACACAAGCCTATGAGAGCCATCCTCATTCAAACCACCAC
GCTAAGCTTTAGGAAATTTAAATATCATGCACTTTTACAGCTTCTTTGAA
GCTCTAGAAAATGGTTATCCATATTACCAATAAAGGCCCACCAATGATTT
TGTTTTTATATCCAAACCGTGCACGAAAATGGTGGTCCCAGGATTTTAAA
ACAATTGTTAAACCTCCTTTTTCTATCTTAAATAAAATTTTTTTTCCCGG
TTAAATCCCCCAACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_k19.b1 MSMg01no446_k19.b1 CHROMAT_FILE:
MSMg01no446_k19.b1 PHD_FILE: MSMg01no446_k19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:16 2005
         (248 letters)



>mm_chr1_71726186_71726834
          Length = 649

 Score =  455 bits (235), Expect = e-132
 Identities = 244/247 (98%), Gaps = 1/247 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgctttt-aaaataaatgttcttattctctgatgctaaaagttaaatacactcagaaatt 59
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tgcttttaaaaataaatgttcttattctctgatgctaaaagttaaatacactcagaaatt 388

                                                                       
Query: 60  tgatgcaagtgactcttagtctgcatcgctttccctccctttccactcaccatgggaagc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tgatgcaagtgactcttagtctgcatcgctttccctccctttccactcaccatgggaagc 328

                                                                       
Query: 120 cccaccaacaggcctcctgcactctgtgagcccctgatgctaaatataattgtccaaatc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 cccaccaacaggcctcctgcactctgtgagcccctgatgctaaatataattgtccaaatc 268

                                                                       
Query: 180 agttggacgatctttatagggatctacagcttggataaaaatccattaatctgatgctta 239
           ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 agggggacgatctttatagggatctacagcttggataaaaatccattaatctgatgctta 208

                  
Query: 240 aaatgga 246
           |||||||
Sbjct: 207 aaatgga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 649
Length adjustment: 9
Effective length of query: 239
Effective length of database: 640
Effective search space:   152960
Effective search space used:   152960
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)