BAC Information

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BAC

Clone NameMSMg01-446L04
Chromosome1 (Build37)
Map Location 102,782,574 - 102,935,638
singlet/doubletdoublet
Overlap genenone
Upstream geneC230078M14Rik, EG666200
Downstream geneLOC100041909, LOC100040993, LOC383650
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446L04.T7 (MSMg01no446_l04.b1)MSMg01-446L04.TJ (MSMg01no446_l04.g1)
ACCAG535331AG535332
length745781
length of high quality
(start - end)
530 (38 - 567)128 (134 - 261)
definitionCHROMAT_FILE: MSMg01no446_l04.b1 PHD_FILE: MSMg01no446_l04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:18 2005CHROMAT_FILE: MSMg01no446_l04.g1 PHD_FILE: MSMg01no446_l04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,935,215 - 102,935,638)(102,782,574 - 102,782,700)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCA
CCTGATGACTACCGAATACCTGAGAAGAACCTGAAAAAATGTTCAGTATC
CTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCA
CACCAGTCAGAATGGTTAAGATAAAAAATTCAGGTGACAGCAGATGCTGG
CAAGGATGTGGAGAAAGAGGAACATTCCTCCATTTTTGGTGGGATTGTAA
GCTTGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTCATAAATTTTG
ACATAGTACTAACCAAATTATTAATCAGATCCTGTTATAGGATTACCATC
CCCTGTCCACAGGATAACCACAGTCCACAGAGGAACCTGATGCAAACATT
TAGCATGTATATCCCGATGGTGAAAGCCAGCTACCTCCAAAATTGATGGT
GTTCCTAGACAGCAGAAAGCAGCTTAAGAGACATGACACGGTGATTCCCT
TTTCACCATTGGCTTCCACCTCCCTTTTTCTTTCCTTCCTTTTATATTAA
CAAGAAAGAAGGTATGTTGACATCAGGATCTCTCAAATCTATGATCTTTC
CTAAGCAACAGTGCTACCTACAGACCTGTTACTAATACAACCCATATCCT
ACTCCCAGAATCTCCTTGGCTCACCACCCCTCCTTTAAACCCCTCCCTTC
CCCCTCTTTCTCTCCTCTTTCTCCATTTCCCCTCTTTTCTACCTG
CTCCGCATCTTCGATGTAGTGGTAGNCTGGNGGNCGNCTGGCCTTTCCCT
ACCGGAGAACNANAGAAGGATTGACANAAACTCGGGGAGGACCNTNAAGG
AGCCATGAAACCCGAGNNCAANATTTTATGACCAACCATCAAGTGAGTGA
ACTGAGCAGAATTCTGCTGTTTTGCTTTCTCACTATAGCATTTGCTTTTT
GTGGAATCTGTTTGTGCAAGCACTATTTCTTTTCCTGAAATGCAAAGAAG
CTTCACACTGTTATATGAGGTTTAAAGTCATTAACTGACCTGGTGTAAGG
AGTGTTTTCTTGCCCTCATCCCACTCCTTTTTTTTTTTCCTTTGGCTGTC
TCATACCCCTTATTCCCTATTATTGACTTTACTCATGTGCCCTTTTATGC
CCTTTGACTTTCTATTACACTTTTTGACAACTTCACACAAAAACAACTTC
TCGTTTTCCCCCTCCTCCGTTTCTTCCAGGTTTCCCTATTTATAACCCAC
CCCTTTCCCCTCTGCCCTCCCCCTCCCCCCCTTCACCGTTTTTTCTACTT
TCCCCTTTCCCCCTTTTTTCTTCTACACCCCCACCCCTCTTTTCCCCCTC
TTTTTTTTCCCTTTTCCCACCCCCCCTTTTATCCCTTCCCTACCCCCCAT
CTTACCTTTTTTCTACTCTTGACCTCTCTTCCACTGCATATGTGCACCTC
CCCCCGTGTTCCCTTCTCTTTTTTCACACACATCCCTACCTGCCCCCCCC
TTATCCACTTTCCCTTACTCTAAATATTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_l04.b1 MSMg01no446_l04.b1 CHROMAT_FILE:
MSMg01no446_l04.b1 PHD_FILE: MSMg01no446_l04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:18 2005
         (530 letters)



>mm_chr1_102934709_102935638
          Length = 930

 Score =  766 bits (396), Expect = 0.0
 Identities = 417/424 (98%)
 Strand = Plus / Minus

                                                                       
Query: 107 cacctcacaccagtcagaatggttaagataaaaaattcaggtgacagcagatgctggcaa 166
           ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 930 cacctcacaccagccagaatggttaagatcaaaaattcaggtgacagcagatgctggcaa 871

                                                                       
Query: 167 ggatgtggagaaagaggaacattcctccatttttggtgggattgtaagcttgtacaacca 226
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 ggatgtggagaaaaaggaacattcctccatttttggtgggattgtaagcttgtacaacca 811

                                                                       
Query: 227 ctctggaaatcagtctggcagttcctcataaattttgacatagtactaaccaaattatta 286
           ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 810 ctctggaaatctgtctggcagttcctcataaattttgacatagtactaaccaaactatta 751

                                                                       
Query: 287 atcagatcctgttataggattaccatcccctgtccacaggataaccacagtccacagagg 346
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 750 atcagatcctgttataggattaccatcccctgtccacaggataaccacagtccacagaga 691

                                                                       
Query: 347 aacctgatgcaaacatttagcatgtatatcccgatggtgaaagccagctacctccaaaat 406
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 aacctgatgcaaacatttagcatgtatatcccgatggtgaaagccagctacctccaaaat 631

                                                                       
Query: 407 tgatggtgttcctagacagcagaaagcagcttaagagacatgacacggtgattccctttt 466
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 tgatggtgttcctagacagcagaaagcagcttaagagacatgacacggtgattccctttt 571

                                                                       
Query: 467 caccattggcttccacctccctttttctttccttccttttatattaacaagaaagaaggt 526
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 570 caccattggcttccacctccctttttctttccttccttttatattaacaagaaggaaggt 511

               
Query: 527 atgt 530
           ||||
Sbjct: 510 atgt 507


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space:   478400
Effective search space used:   478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no446_l04.g1 MSMg01no446_l04.g1 CHROMAT_FILE:
MSMg01no446_l04.g1 PHD_FILE: MSMg01no446_l04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:18 2005
         (128 letters)



>mm_chr1_102782374_102782901
          Length = 528

 Score =  215 bits (111), Expect = 9e-61
 Identities = 123/127 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaccatcaagtgagtgaactgagcagaattctgctgttttgctttctcactatagcattt 60
           |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 201 aaccatcaagtgagtgaactgaacagaattctgttgttttgctttctcactatagcattt 260

                                                                       
Query: 61  gctttttgtggaatctgtttgtgcaagcactatttcttttcctgaaatgcaaagaagctt 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 261 gctttttgtggaatctgtttgtgcaagtactatttcttttcctgaaatgtaaagaagctt 320

                  
Query: 121 cacactg 127
           |||||||
Sbjct: 321 cacactg 327


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 128
Length of database: 528
Length adjustment: 8
Effective length of query: 120
Effective length of database: 520
Effective search space:    62400
Effective search space used:    62400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)