BAC Information

Click to search

BAC

Clone NameMSMg01-447A07
Chromosome1 (Build37)
Map Location 6,933,688 - 6,934,038
singlet/doubletsinglet
Overlap genenone
Upstream gene4732440D04Rik, Rb1cc1, EG620393, LOC100039302, LOC664946, St18, LOC665015, LOC665027
Downstream geneLOC100039347, LOC435608, Pcmtd1, LOC545302, LOC665063, LOC665069, LOC100039408
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-447A07.T7 (MSMg01no447_a07.b1)MSMg01-447A07.TJ (MSMg01no447_a07.g1)
ACCAG535575AG535576
length620766
length of high quality
(start - end)
---512 (76 - 587)
definitionCHROMAT_FILE: MSMg01no447_a07.b1 PHD_FILE: MSMg01no447_a07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:43 2005CHROMAT_FILE: MSMg01no447_a07.g1 PHD_FILE: MSMg01no447_a07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGCACCCCCCCCCNCCGGCGGCGGGGGCGGGCCGGCCCCCCCCNAAAA
CAGCGGGGGGCGCGAAAACACCGGGCCCCAGGCGCGGGCCCCCACACCGG
GCCGGGGCCCCGCCCCCGGGGGGGGCCCGCAGCCCCCCCCCCCCCGCGCG
CGCGGGGCGGGCGGCCCGGCCGCCACCCCACAAAAAACCCACCAAGGGGG
GGGGGGGGGGGGCCCGCCGCGCGCGGCGGGGCCGGGCGGCCAACCCCCAA
GGAGCNNGTCTNGGGGGCGGGCGGGGCGGGGGACAGGCGGCGGGGGGGGC
GCGCGCCGCAAACAAGACCGCGGGTTAGCTTGNCGGGGCCCCCCCCCCCC
CCAAAAAAAAAAAAATAAATAATGTTGTGCCCGCNNGCCGGCCCCGCCCC
TTAAAAAAAAAACACGGCGGGGGAAAAACCTTCTTTCCCCCCCCCCCCCA
AANNCNAAAAAAAAGAAAAAAANGGGGCGCGGGTTTGCGGGGGTGGGGGG
AGNAAANNACGCAACAACCCGGCCCCCCNAAAAAAAAAAATTTTTTCCCG
CGGGGGGGGAAAAAAAAGGGGGNGNGTTTTNGGCTTNGGANCNNNNAAGG
GGNNNAAAAGGNNANNGGCC
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCATAAGGGTAATGGTGGAGGAAGTC
TTAAAGGTGAGAAGGCAGATGTTGACATAAACTACTTAGATGCAAAACAG
AGTTCATTGGTCTCAGAAGCTCAAGGAAGGAGTTGGTGGCAATTCACTGA
TGGATGCACTATAACTGAATAAATTCTGCCTGAAATATTTGGGCTGAGTT
GTTACAGTTTCAATGAATAATAAAAGTAAGTTTTACTAGATAAATTTGCA
CATATATGCAAGACTTGTAATGCATTCTGTGCCTACACAGAGAGAAATCA
CTTTAGGGCCTTTAGAAAGTCCAGGCACAGCAGGGTTGATACATATGTGA
ATTCACTGAGACCATGGCAGCATGTACAGGACATGTACAGGTCCAAAATA
GATGGGGCCTCAGCAATGAGAGTGGAAAGCTATCTCCAATTAACAACTGC
TTGCAAAGGAAAAAATTACTTTTCTCCAATGAAGGATCACTGGACATAAA
AACCACACTTAAGGGTAAGCCTTGTGCCCAGCAGTAGATAGACAACACAA
AGCATACTCATTGGTATTTATGTAGGGACTCCATTTTGGTTTTGGTTTGT
TTTTTTGCCCCCCATGTCTTGTTTGGCCCTTTTTTCCACCTTACTTGTCC
CTTGCTTATACTTTGTGCGCTTTTCGTCTTTTTTCCTATTTTATTTCTTT
CCTTCGTCTCCCTAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no447_a07.g1 MSMg01no447_a07.g1 CHROMAT_FILE:
MSMg01no447_a07.g1 PHD_FILE: MSMg01no447_a07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:43 2005
         (512 letters)



>mm_chr1_6933327_6934238
          Length = 912

 Score =  625 bits (323), Expect = 0.0
 Identities = 344/351 (98%)
 Strand = Plus / Plus

                                                                       
Query: 162 atttgggctgagttgttacagtttcaatgaataataaaagtaagttttactagataaatt 221
           |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 362 atttgggctgagttgttacagttttaatgaataataaaagtaagttttactaaataaatt 421

                                                                       
Query: 222 tgcacatatatgcaagacttgtaatgcattctgtgcctacacagagagaaatcactttag 281
           ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 422 tgcacatatatgcaagacttgtaatgcattctgtggctacacagagagaaatcattttag 481

                                                                       
Query: 282 ggcctttagaaagtccaggcacagcagggttgatacatatgtgaattcactgagaccatg 341
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 482 ggcctttagaaagtccaggcacagcagggttgatatatatgtgaattcactgagaccatg 541

                                                                       
Query: 342 gcagcatgtacaggacatgtacaggtccaaaatagatggggcctcagcaatgagagtgga 401
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| 
Sbjct: 542 gcagcatgtacaggacatgtacaggtccaaaatagatggggcctcagcagtgagagtggg 601

                                                                       
Query: 402 aagctatctccaattaacaactgcttgcaaaggaaaaaattacttttctccaatgaagga 461
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 aagctatctccaattaacaactgcttgcaaaggaaaaaattacttttctccaatgaagga 661

                                                              
Query: 462 tcactggacataaaaaccacacttaagggtaagccttgtgcccagcagtag 512
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 tcactggacataaaaaccacacttaagggtaagccttgtgcccagcagtag 712


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space:   452804
Effective search space used:   452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)