BAC Information

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BAC

Clone NameMSMg01-447B22
Chromosome1 (Build37)
Map Location 90,192,659 - 90,193,020
singlet/doubletsinglet
Overlap genenone
Upstream geneEfhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822
Downstream geneTrpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347, Sh3bp4, LOC383542
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-447B22.T7 (MSMg01no447_b22.b1)MSMg01-447B22.TJ (MSMg01no447_b22.g1)
ACCAG535653AG535654
length763785
length of high quality
(start - end)		502 (52 - 553)360 (81 - 440)
definitionCHROMAT_FILE: MSMg01no447_b22.b1 PHD_FILE: MSMg01no447_b22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:51 2005CHROMAT_FILE: MSMg01no447_b22.g1 PHD_FILE: MSMg01no447_b22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTTACAGATATAATTAAGGAGAATATCATGATTTTATAA
ACTCAAATGAATGAGACTCATCAATTCAGATTCCCAGTAACAATTGTATT
CTGAGAGTGTAAATATTAGAGACATATTTGGCAAAATATCAGGGTTCCTG
TTGATTTCATATATGGAAAAGCCAAAGCCAGAGCATACTTGTGATTTTCA
GTATGAGTTCTGTAAAAGTTTATAGTGTTTAAAATTAGCAGCAATTTACA
GATAACATTTGGAGTCAATAAAAGGACAATTCTCTACTGTATTGCATTGT
CCACACCCCATAAAGATAAAAAAGATATGTGTAATGTGGTTGACATGGCA
GAGAAGCTGGAAGTTCATTAAACCTTGAAATGTTCATGAAATATTATCTC
TCAAAAATGAGATGTTACCACTATTAGTAATACCATCACTTTTCAAAAAA
CACAAACAGATCCCTTTTAGTCCATATATTGCGTCCTTATTCTAAAGAGA
GAGTAAAGAACTGTACTTTTGTAGTTGTTAATTCCAGTTATTTTGTATTG
ATCAAAATATAAACTTCACATGGACAGCTATCTTAGTTCATTATTGATGG
CGCATCTGTCCTAAACAGGGACCCATTTGAGAAATTTATAAAGTGGCTGA
TAATGCCGGAAGGATGTCTCCCTATCATGACCCCCAAAATGGCCAGGATC
CACATGGGAGGGA

NNNNCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGCTTGTGTGAGACTGTAT
CAGTTTAATGTGTACTATCTAGGAAACAGTACAAACATGGCTTAACACCA
CAGGACCCCTTCTCTTCTCCTTGTGTGTTTGTGTGTGCACACACATGTGT
GTGGGGTTTGCACACGTACCACAGCACAAATGTGACCAGAGGACAACTTT
TGGGAAATGATTCTCCTCTTCCACCTCATTGAGGTGAGGTCTCTTGTTTC
TGCTGTGCTGCACACAGCAGGTGATGGTTTGGATAAGCTCAGGAAGTGGC
ACTATTAGAGGGTGTGGCCCTGCCTTGTTGGAGTAGGTGTGTCAATGTGG
GTGTGGGCTTTAAGACCCTTCTGCTAGCAGCCATAGATGAAGATATTGTA
GAACTCTTAGCATCTCCTGCACCATGCCTGCCTGGCTACTGCCATGTTCC
TGCCTTGATGACAATGGACTGAACCTCTGAATTTTTTAGTCCACCCCCAT
TAAATGTGGCCCTTTAAAAAAATTGCCTTGGTCACGGGGTCTGGTTCACA
CAACATAACCCTCATTATAAAAAAGATGAGTTTTGTAATATGGAAACTAC
CCATATAATCTCTTGCTTTAATTTTCCCATTTGGGTTGGTAATAACAATA
CAAATATTTTTCTCTACATACCCCTTACCTCTGCCTTACCTCCACTACAC
ATATTAATCTAATGCGTTTCGTATCCTAATCACAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no447_b22.g1 MSMg01no447_b22.g1 CHROMAT_FILE:
MSMg01no447_b22.g1 PHD_FILE: MSMg01no447_b22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:51 2005
         (360 letters)



>mm_chr1_90192459_90193218
          Length = 760

 Score =  642 bits (332), Expect = 0.0
 Identities = 354/362 (97%), Gaps = 2/362 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgcttgtgtgagactgtatcagtttaatgtgtactatctaggaaacagtacaaacatgg 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 ctgcttgtgtgagactgtatcagtttaatgtgtactatccaggaaacagtacaaacatgg 260

                                                                       
Query: 61  cttaacaccacaggaccccttctcttctccttgtgtgtttgtgtgtgcacacacatgtgt 120
           |||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 cttaacgccacaggacccctcctcttctcgttgtgtgtttgtgtgtgcacacacatgtgt 320

                                                                       
Query: 121 gtggggtttgcacacgtaccacagcacaaatgtgaccagaggacaacttttgggaaatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtggggtttgcacacgtaccacagcacaaatgtgaccagaggacaacttttgggaaatga 380

                                                                       
Query: 181 ttctcctcttccacctcattgaggtgaggtctcttgtttctgctgtgctgcacacagcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctcctcttccacctcattgaggtgaggtctcttgtttctgctgtgctgcacacagcag 440

                                                                       
Query: 241 gtg--atggtttggataagctcaggaagtggcactattagagggtgtggccctgccttgt 298
           |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgtgatggtttggataagctcaggaagtggcactattagagggtgtggccctgccttgt 500

                                                                       
Query: 299 tggagtaggtgtgtcaatgtgggtgtgggctttaagacccttctgctagcagccatagat 358
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 501 tggagtaggtgtgtcaatgtgggtgtgggctttaagacccttctgctagcagctgtagat 560

             
Query: 359 ga 360
           ||
Sbjct: 561 ga 562


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 760
Length adjustment: 9
Effective length of query: 351
Effective length of database: 751
Effective search space:   263601
Effective search space used:   263601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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