AGACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCTTAACATTTCCATAGCTTATGTCTATTTCTTACAGTGTG
AGTATTCTGCTTCTATTGATCCTTACCTGTCTGCTCACATTCAAGCATCC
GTTATTTCATTCCCTCTCCAGGGAATCCCTGTGGAATACACAGCTGAATG
CAGATTCTCTGGAAGTAGGAAAGTGGGAAGAGATGGAAACCTCATAGACC
AGTGTGTGCCTTTATATTCTATGTCTGACTTTTGGTCCTCCACTTCAAAA
CCTGATTTTCTTTGGACCTGTTGTTGTTTTTTCAGAGGGCTAAAATCAGT
TTTCCTGGGGAAATATGTTTCTTGTCTGTAGACAGAGTAAAGGAAATAAG
CCATTTGTCAGTTTAGGATGATGGAGAGAGAAATTTCACAGAACATCATG
AAGACCATGACAGTTTTCCCATGTTCACACTGAAGTTCTAGCTTAGTCTT
TATGTTACACACTCACAGAACCTTCATAGCTCTATCAGGCCAAATGTTAT
GGTAATCTCTGGTCAATATGTTCCTTGAAATCTCTGTTTAATTGAACTTT
TTCCTATCCTTTTTAATAACCAGGTTGCATTGTAATTAATTATTACTGCC
TCCTATTAAAATGTTTTAAGTGACTTTAAGTTATTCACTGTTACTAATAG
CCTANTGATGTCAATGCGTTTCTTACTTCTAATGAACCCCAATGTTTTGA
TGACTGC

NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAAT
GGCTGAGAAGCACCTGAAAAAATGTTCAGCATCCTTAATCATCAGGGAAA
TTCAAATCAAAACAACCCTGAGATATCACCTCACACCAGTCAGAATGGCT
ACGATGAAAAATTCAGGTGGCAGCAGATGCTCGGGAGGATGTGGAGAAAG
AGGAACACTCCTCCATTGTTGGTGGGATTACAAGCTTGTACAACCACTCT
GGAAAATTGGGCATAGTACTACCGGAGGATCCCGAAATACATCTCCTGGG
CATATATCCAGAAGATGTTCCAAGTGGTAATAAGGTCACATGCTCCACTA
TGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAATGAACCCAGA
TGCCCCTCAACAGAGAAATGGATACAGAAAATGTGGTACATTTACACAGT
GGAGTAGTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCA
AATGGATGGTCGTGGAGGGCACCATCCTGAGTGAGCTAACTCAGTCACAA
AAGAACTCACATGATATGTACTCACTGATAAGTGGATATTATCCCAGAAA
CTTAGAATACCCAAGCTATAAGATACAAATTGCGAAAAACATGAAACTTC
AGAAAAAGGAAGACCCAAGTGGGGACCCTTTGCCCCTTTCTTAAAATTGG
GAACAAAA

Query= MSMg01no447_i19.b1 MSMg01no447_i19.b1 CHROMAT_FILE:
MSMg01no447_i19.b1 PHD_FILE: MSMg01no447_i19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:29 2005
         (622 letters)



>mm_chr1_3613685_3614705
          Length = 1021

 Score = 1118 bits (578), Expect = 0.0
 Identities = 608/618 (98%), Gaps = 1/618 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcttaacatttccatagcttatgtctatttcttacagtgtgagtattctgcttc 64
           ||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctta-catttaaatagcttatgtctatttcttacagtgtgagtattctgcttc 263

                                                                       
Query: 65  tattgatccttacctgtctgctcacattcaagcatccgttatttcattccctctccaggg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tattgatccttacctgtctgctcacattcaagcatccgttatttcattccctctccaggg 323

                                                                       
Query: 125 aatccctgtggaatacacagctgaatgcagattctctggaagtaggaaagtgggaagaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aatccctgtggaatacacagctgaatgcagattctctggaagtaggaaagtgggaagaga 383

                                                                       
Query: 185 tggaaacctcatagaccagtgtgtgcctttatattctatgtctgacttttggtcctccac 244
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tggaaacctcacagaccagtgtgtgcctttatattctatgtctgacttttggtcctccac 443

                                                                       
Query: 245 ttcaaaacctgattttctttggacctgttgttgttttttcagagggctaaaatcagtttt 304
           ||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||
Sbjct: 444 ttcaaaacctgattttctttggacctgttgttgtaggttcagagggctaaaatcagtttt 503

                                                                       
Query: 305 cctggggaaatatgtttcttgtctgtagacagagtaaaggaaataagccatttgtcagtt 364
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 504 cctggggaaatatgtttcttgtctgtagacagagtaaagaaaataagccatttgtcagtt 563

                                                                       
Query: 365 taggatgatggagagagaaatttcacagaacatcatgaagaccatgacagttttcccatg 424
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 564 taggatgatggagagagaaatttcacagaacatcatgaagaccatgccagttttcccatg 623

                                                                       
Query: 425 ttcacactgaagttctagcttagtctttatgttacacactcacagaaccttcatagctct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttcacactgaagttctagcttagtctttatgttacacactcacagaaccttcatagctct 683

                                                                       
Query: 485 atcaggccaaatgttatggtaatctctggtcaatatgttccttgaaatctctgtttaatt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 atcaggccaaatgttatggtaatctctggtcaatatgttccttgaaatctctgtttaatt 743

                                                                       
Query: 545 gaactttttcctatcctttttaataaccaggttgcattgtaattaattattactgcctcc 604
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 744 gaactttttcctatcctttttaataaccaggttgcattgtaattaattattactgcatcc 803

                             
Query: 605 tattaaaatgttttaagt 622
           ||||||||||||||||||
Sbjct: 804 tattaaaatgttttaagt 821


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1021
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1011
Effective search space:   618732
Effective search space used:   618732
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)