BAC Information

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BAC

Clone NameMSMg01-447L04
Chromosome1 (Build37)
Map Location 79,147,634 - 79,147,899
singlet/doubletsinglet
Overlap genenone
Upstream genePax3, LOC100039210, Sgpp2, LOC100039382, Farsb, Mogat1, Acsl3, Utp14b, LOC620521, Kcne4, LOC100039260, EG545332
Downstream geneScg2, Ap1s3, Wdfy1, Mrpl44, Serpine2, EG433326, LOC665064, LOC100039325
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-447L04.T7 (MSMg01no447_l04.b1)MSMg01-447L04.TJ (MSMg01no447_l04.g1)
ACCAG536088AG536089
length775771
length of high quality
(start - end)
447 (72 - 518)442 (78 - 519)
definitionCHROMAT_FILE: MSMg01no447_l04.b1 PHD_FILE: MSMg01no447_l04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:41 2005CHROMAT_FILE: MSMg01no447_l04.g1 PHD_FILE: MSMg01no447_l04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCG
GAATTCTTTGTTCAGTTCCGAGCCCCATTTTTTAATGGGGTTATTTGATT
TTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCC
CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT
TTTTGTCTTATTGACAGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCA
TTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTT
CTGTTCAGCAATTTTTTCCCCTGTGTTTATATCTTCAAGGCTTTTCCCCG
CTTTCTCCTCTATAAGTTTCAGTGTCTTTGGTTTTATGTGAAGTTCCTTG
ATCCACTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCGATTCG
CATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAA
TGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCCAAGATTAAG
TGACCATACGTGTGTGGGTTTATTTCTGGGTCCTCATTTCTATTCCTTTG
GTCTACTTGTTCGTCTTTATACCATTATCATGCAGCTTTTATCCCCATTG
TTTCCGTATTTTTGTTTTTTATTCTTGCCTCGGCGTTTCCCACTCCCATG
GCTCTTTTTATCCTTAGATCAATATTCTTCTCCTTATCCCCCCGCCCATT
TTTTTTTTCTTTCTACAATCCATTN
NTACCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAACCCCATT
TTTAAATGGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTA
TATATGTTGGATATTAGACCCCTATCTGATTTATGATAGGTAAAGATCCT
TTCCCAATCTGTTGGTGTTCTTTTTGTCTTATTGACGGTGTCTTTCGAGG
TCTACTTTCTAACTAGAAAAGCATATACATATGCTCTTTTGGTGCAGGTA
ATAAAGAGGTACATGTTTGTATACATCTACTAAAGTACATTTTTACTAAG
AAAAAAAAGTTCTCAGAAAGTTCTCAAATAGTCCACGTTCCCCTTGCAAA
ATAAACCACTACAGAATTTACTGTTTCTAAACAACAATTCAGTATCGTTT
GCCACAGTTTGAAAGGTTGAATGTCTCCTCTGGGAAGCTCACAGAGTTTT
TCATTGCAATCACCCTGGGATACTGTCATCAGAGTTATTACCAGGGCTGG
GTGCTGCTGTTTAAAACCACAACAAAACCTATCTTAATCTTATCTAATCT
CAACTATATAATTCTAAATTATAGCATTTTCTACTTTCTCAACCATCTGC
TGGGGTTAGTCCTTTTTTTACTGCCCTGTTGTTATAGGGTTGTCCTTTGG
TATTTAACTCCCATTGGGGCGGTATTTCCGTTTCTCTTATTCTAATAATT
TTGTCCCTACTTTGTCTCTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no447_l04.g1 MSMg01no447_l04.g1 CHROMAT_FILE:
MSMg01no447_l04.g1 PHD_FILE: MSMg01no447_l04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:41 2005
         (442 letters)



>mm_chr1_79147261_79148099
          Length = 839

 Score =  447 bits (231), Expect = e-130
 Identities = 259/269 (96%), Gaps = 3/269 (1%)
 Strand = Plus / Minus

                                                                       
Query: 174 tctactttctaactagaaaagcatatacatatgctcttttggtgcaggtaataaagaggt 233
           ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 639 tctactttctaactagaaaagcatatacatatgcttttttggtgcaggtattaaagaggt 580

                                                                       
Query: 234 acatgtttgtatacatctactaaagtacatttttactaagaaaaaaaagttctcagaaag 293
           ||||| ||||||||||||||||||||||||||||||||  ||||||||||| ||||||||
Sbjct: 579 acatgcttgtatacatctactaaagtacatttttacta--aaaaaaaagtt-tcagaaag 523

                                                                       
Query: 294 ttctcaaatagtccacgttccccttgcaaaataaaccactacagaatttactgtttctaa 353
           |||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 522 ttctcaaagagtccacattccccttgcaaaataaaccactacagaatttagtgtttctaa 463

                                                                       
Query: 354 acaacaattcagtatcgtttgccacagtttgaaaggttgaatgtctcctctgggaagctc 413
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 acaacaattcagtatggtttgccacagtttgaaaggttgaatgtctcctctgggaagctc 403

                                        
Query: 414 acagagtttttcattgcaatcaccctggg 442
           |||||||||||||||||||||||||||||
Sbjct: 402 acagagtttttcattgcaatcaccctggg 374


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 839
Length adjustment: 9
Effective length of query: 433
Effective length of database: 830
Effective search space:   359390
Effective search space used:   359390
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)