BAC Information

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BAC

Clone NameMSMg01-447L19
Chromosome1 (Build37)
Map Location 68,935,861 - 69,079,260
singlet/doubletdoublet
Overlap geneErbb4
Upstream genenone
Downstream geneLOC667842, EG241084, Ikzf2, Spag16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-447L19.T7 (MSMg01no447_l19.b1)MSMg01-447L19.TJ (MSMg01no447_l19.g1)
ACCAG536118AG536119
length750784
length of high quality
(start - end)		541 (51 - 591)416 (81 - 496)
definitionCHROMAT_FILE: MSMg01no447_l19.b1 PHD_FILE: MSMg01no447_l19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:44 2005CHROMAT_FILE: MSMg01no447_l19.g1 PHD_FILE: MSMg01no447_l19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,935,861 - 68,936,397)(69,078,961 - 69,079,260)
sequence
NNCCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCATGTCTGTCCCCACATGGAATAGGACCTTCTGCAAGTTT
TTCTCTCACCTCTGTGCACACACTATGTCATGTACACAGTATTGCAAGAA
CACATATATTCATGTGCATGAACACACAATTTGTTAATTATTTAATTTTA
AAATAACCTTAAATATTTTACTCAACATTTTTAACCTAAAGTACAGATAC
ATAAAATTTTAAATATGGTTGCTAAAAACAGCCATAAAATAATAACATAA
TCATTAAAATCATGTTCTCAATTGTAGACAAGTGATCAATTTAACATGTG
ATGGCTTAATTGTATATTTGTTTGAAATATAAAATGTTACACAAAGCTTT
TACTGTGAAACTGAAATTACTTTTCATATACAGTGTTTTGCAAAGTTCCT
CTTTGGGGAACGAAATGTTTTTATAAAAAGTTTAATCAAAAGTCAATTTG
GCTCAGCTTTATAGTATAGACAGAAATCTGAATTTTTACATTGCTGTAGG
TGAGGCATTTTATTATTATTGTTTTAAACTTTTGGCGCTCGACTTCTGTT
GCTTCAAGATAAAATCTGATATGGCAGAACAAAGGCTAAGACTTGCTCAT
CTTATTGTTTCCTCTAATTTAAAAATAAAAGTGCATATATGCTGCACTCT
ACTGTTCAGAAAACAATATACCATTCTACCCTTTCAAAAAATTTGGGCGG


TTTTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATATATATTCCTCTTTTTG
GTGCCATAATATTTTATTATTTATGGATGTTGTATCTTGTTTTATCCATT
GATAAATTTATGGTCACCAAGAAAAACATTTATTTCTTTGGCATGATGGG
TTCATTTCTTCTGCGTAGGATTGCTGAATTATACGGGATATTTTTATTTA
TTTTTTTTGAGAAACTGCAATATATTTCTCTGTATTGGACATATTAATTT
ACACCTCTACCAGTTTGTTTGTTTGTTTGTTTGTTTGTGGTCTGTTTAGC
TTTAAATGTTGCCATATTCCAAAAATAATCCTCCCCAAAACAAAAAAAGC
CAGGCGTGGTGGTGCATGCCTTTAATCCTAGCACTCTGGAGGCAGAGGCA
GGGGTTTTTCTGAGTCCAGCCTGGTCTACAAAGTAAGTTCCAAGACAGCC
AAGGCTACACAGAGAAAACCTGTCTTGGAAAACAAAAAACAAACTAACCA
AACTAAACCTAAAAACCCTTAACCAACCTATTATAAAAAACCCCCAATGT
GGCCATAATGGATTAATTGGGTTTTAAGTAAAAAAAAAAAAACCATCTTG
GCTGGGAAAAATTTTTGCCCGAAAATTTTCCATGGTTGGTTTCCCAAAAA
AAAGAAAGGGGGGGGGTTTTCTCTCCAATCTGGCAAGTGCTCCTTGAAAT
CAAATCCTCTCACTATCAAGGGTCAGTAGGGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no447_l19.b1 MSMg01no447_l19.b1 CHROMAT_FILE:
MSMg01no447_l19.b1 PHD_FILE: MSMg01no447_l19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:44 2005
         (541 letters)



>mm_chr1_68935657_68936597
          Length = 941

 Score = 1015 bits (525), Expect = 0.0
 Identities = 534/537 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatgtctgtccccacatggaataggaccttctgcaagtttttctctcacctctg 64
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatgtctgtccccacatgaaataggaccttctgcaagtttttctctcacctctg 264

                                                                       
Query: 65  tgcacacactatgtcatgtacacagtattgcaagaacacatatattcatgtgcatgaaca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgcacacactatgtcatgtacacagtattgcaagaacacatatattcatgtgcatgaaca 324

                                                                       
Query: 125 cacaatttgttaattatttaattttaaaataaccttaaatattttactcaacatttttaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cacaatttgttaattatttaattttaaaataaccttaaatattttactcaacatttttaa 384

                                                                       
Query: 185 cctaaagtacagatacataaaattttaaatatggttgctaaaaacagccataaaataata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cctaaagtacagatacataaaattttaaatatggttgctaaaaacagccataaaataata 444

                                                                       
Query: 245 acataatcattaaaatcatgttctcaattgtagacaagtgatcaatttaacatgtgatgg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acataatcattaaaatcatgttctcaattgtagacaagtgatcaatttaacatgtgatgg 504

                                                                       
Query: 305 cttaattgtatatttgtttgaaatataaaatgttacacaaagcttttactgtgaaactga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cttaattgtatatttgtttgaaatataaaatgttacacaaagcttttactgtgaaactga 564

                                                                       
Query: 365 aattacttttcatatacagtgttttgcaaagttcctctttggggaacgaaatgtttttat 424
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 565 aattacttttcatatacagtgttttgcaaagttcctctttggggaacaaaatgtttttat 624

                                                                       
Query: 425 aaaaagtttaatcaaaagtcaatttggctcagctttatagtatagacagaaatctgaatt 484
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaaaaatttaatcaaaagtcaatttggctcagctttatagtatagacagaaatctgaatt 684

                                                                    
Query: 485 tttacattgctgtaggtgaggcattttattattattgttttaaacttttggcgctcg 541
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tttacattgctgtaggtgaggcattttattattattgttttaaacttttggcgctcg 741


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space:   494361
Effective search space used:   494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no447_l19.g1 MSMg01no447_l19.g1 CHROMAT_FILE:
MSMg01no447_l19.g1 PHD_FILE: MSMg01no447_l19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:44 2005
         (416 letters)



>mm_chr1_69078961_69079776
          Length = 816

 Score =  580 bits (300), Expect = e-170
 Identities = 300/300 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   catatatattcctctttttggtgccataatattttattatttatggatgttgtatcttgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 catatatattcctctttttggtgccataatattttattatttatggatgttgtatcttgt 241

                                                                       
Query: 61  tttatccattgataaatttatggtcaccaagaaaaacatttatttctttggcatgatggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 tttatccattgataaatttatggtcaccaagaaaaacatttatttctttggcatgatggg 181

                                                                       
Query: 121 ttcatttcttctgcgtaggattgctgaattatacgggatatttttatttattttttttga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 ttcatttcttctgcgtaggattgctgaattatacgggatatttttatttattttttttga 121

                                                                       
Query: 181 gaaactgcaatatatttctctgtattggacatattaatttacacctctaccagtttgttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 gaaactgcaatatatttctctgtattggacatattaatttacacctctaccagtttgttt 61

                                                                       
Query: 241 gtttgtttgtttgtttgtggtctgtttagctttaaatgttgccatattccaaaaataatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60  gtttgtttgtttgtttgtggtctgtttagctttaaatgttgccatattccaaaaataatc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 816
Length adjustment: 9
Effective length of query: 407
Effective length of database: 807
Effective search space:   328449
Effective search space used:   328449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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