BAC Information

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BAC

Clone NameMSMg01-448C08
Chromosome1 (Build37)
Map Location 166,593,265 - 166,593,516
singlet/doubletsinglet
Overlap genenone
Upstream geneGm207, LOC100039626, Kifap3, Scyl3, BC055324, 2810422O20Rik, Sele, Sell, Selp, F5, Slc19a2, 4930455F23Rik, Blzf1, Nme7, Atp1b1, LOC100040065
Downstream geneDpt, Xcl1, 1700029M03Rik, Tbx19, Sft2d2, Tiprl, Gpr161, Iqwd1, Brp44, Sacy, Ppia-ps1-1625, Mpzl1, Rcsd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448C08.T7 (MSMg01no448_c08.b1)MSMg01-448C08.TJ (MSMg01no448_c08.g1)
ACCAG536429AG536430
length799859
length of high quality
(start - end)
249 (74 - 322)173 (81 - 253)
definitionCHROMAT_FILE: MSMg01no448_c08.b1 PHD_FILE: MSMg01no448_c08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:18 2005CHROMAT_FILE: MSMg01no448_c08.g1 PHD_FILE: MSMg01no448_c08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCAGAACCGCGGA
ATTCATACTTAGTTCACTGGAAACTGCCTTTCGCAGCTGTTTTCCTGGGG
GCACTTTACAGTTTTTATCAAGATAGTCTCAAGAGATTTGCAATGGAGAT
TACGCCTTCATCTTTTTTTTTTTTTTAAGCTGAGAAAAACAAAGCATACA
ATTTTAAGAGTCCTACCGAGGATATTCAAATATAAAACTCATGTGGGAAA
GTAATATATTCTTTTGACTCTCTGAGCTGTAGCCCTTCTCCCCTAAGAGG
CTTCTCTTTTTCTAAAGAAAATTTTTATCGCCTTATCAGCTCTGTCCCTG
GTTGGACAAGGAAGGAAGTCTCTACTCATCTGTTCAAGCCCAGATTCCCC
ATGGTAGCATCTGAAAAGGAAAATGCCTGTATGGTGTCTCCGTTGTCATA
TTCAGCTTTATTTATTGATTTCACACGATTAATTTTATTGCTCATTGCCA
ACTATCCAATTCTTATGGACATGAATGCCATTATGTACCTTTCGCATATT
TCTTTTCACGCCTTTTTCGCTGCGTTTACTATAATTCCGATACCCCCCGC
GGGCCCTTTTGGGTTTTGCCCGCCTTTTTTAACCTGCCTTATGTCGGCCT
CGGGGTGTTTAATCTCGTAACTCCTATTCTTTCCCGCCGCACCAGCGCAT
TTTTGACCCTTTGTTTTTCCCCCTCTTTTTTATCTTTTCCCTACACCGGC
AAATTGTGGACTGTGCCTTGTTGTGTACTTTCCGTTTAAGCCCCGCTCT
ATCCACGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGTAACATTTGAGTTCCT
GTTTCCAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGGAAAGAAAGAAAGAA
AAAAGAAAGAAAGGAAGGAAGGAAGAGAGGGAGGGTGAGAGAGAGAGAGA
GAGAGATTTTTTCCTTCTCCTCCCCTTATTCCCCCCTTCCCCTCTCTTTC
TCCCCTCTCCAAACACCTCTTTTTTTTTTTTTCACCCCCCCTTATTTTCC
CTCATCCTTTCTTTATTTTCTTTTCCTTGTCTCCCTCCCGTCCGCGCTCC
CTCCACTTTCCCCCTTTTTTTTCCTTTTTCTCCTCCACCCGATCCATTCC
CCCTACTCACCCTTCGCCCCTCCTCCTTTTTTCTTTCTTTCCCCTTCTTT
TATCTTTTCTCCCGCTCTTTCCCCCCCCCCCGCCTGACTCTTCGCCCTAT
ACTCCCTTCTTATTTTTGCCCTTCTCATTCCCTACTCTATCCGCCCCCCG
CCCGTTAAAGCTCCTCTTATCCTTATATCCCATACTTCGAGTCTATCATT
TGATACACCGCCCACCCCTCCCCTCCCCTTTCATCACCACTCCTCCCTTC
TCTTTCCTTTCCTCTTTCCCTTATCTGTTCTCACTCCTTTCCCCTTCTCT
TCTCTTTCCCCCTTTCCTTTCCCCCCCCTTCCTCCCTATCTCCCTTCTCG
TCACCCTCCTCACGTCTCTTTACCTTTGTATTTTGTCTCCCCCTCCCCAA
TCTTTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_c08.b1 MSMg01no448_c08.b1 CHROMAT_FILE:
MSMg01no448_c08.b1 PHD_FILE: MSMg01no448_c08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:18 2005
         (249 letters)



>mm_chr1_166593065_166593717
          Length = 653

 Score =  460 bits (238), Expect = e-134
 Identities = 247/252 (98%), Gaps = 4/252 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgcctttcgcagctgttttcctgggggcactttacagtttttatcaagatagtctcaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ctgcctttcgcagctgttttcctgggggcactttacagtttttatcaagatagtctcaag 393

                                                                       
Query: 61  agatttgcaatggagattacgccttcatc----ttttttttttttttaagctgagaaaaa 116
           |||||||||||||||||||| ||||||||    |||||||||||||||||||||||||||
Sbjct: 392 agatttgcaatggagattactccttcatcctttttttttttttttttaagctgagaaaaa 333

                                                                       
Query: 117 caaagcatacaattttaagagtcctaccgaggatattcaaatataaaactcatgtgggaa 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 caaagcatacaattttaagagtcctaccgaggatattcaaatataaaactcatgtgggaa 273

                                                                       
Query: 177 agtaatatattcttttgactctctgagctgtagcccttctcccctaagaggcttctcttt 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 agtaatatattcttttgactctctgagctgtagcccttctcccctaagaggcttctcttt 213

                       
Query: 237 ttctaaagaaaa 248
           ||||||||||||
Sbjct: 212 ttctaaagaaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 653
Length adjustment: 9
Effective length of query: 240
Effective length of database: 644
Effective search space:   154560
Effective search space used:   154560
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)