BAC Information

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BAC

Clone NameMSMg01-448D14
Chromosome1 (Build37)
Map Location 179,085,108 - 179,228,929
singlet/doubletdoublet
Overlap geneAkt3
Upstream genePld5, Cep170, Sdccag8, LOC666235
Downstream geneZfp238, EG631449, LOC100040770, 1700016C15Rik, Adss, EG631584, EG545391, LOC666262, 5830417C01Rik, LOC666284, 4930527J03Rik, LOC666295
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448D14.T7 (MSMg01no448_d14.b1)MSMg01-448D14.TJ (MSMg01no448_d14.g1)
ACCAG536489AG536490
length740773
length of high quality
(start - end)		518 (45 - 562)461 (76 - 536)
definitionCHROMAT_FILE: MSMg01no448_d14.b1 PHD_FILE: MSMg01no448_d14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:25 2005CHROMAT_FILE: MSMg01no448_d14.g1 PHD_FILE: MSMg01no448_d14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(179,228,418 - 179,228,929)(179,085,108 - 179,085,568)
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCG
GAATTCAGCTTATTGTCTTGGGCAGTATCCTGGAAAACACAATCCAGAAG
AGTATGAATATTAAAACTATAGTCTTTTTACAAATTGAAAAACACCTTAA
ACTAAATGAGCCTGTAAGGCAATTTTGTTCTTTAATGCCAACCCACAGAT
GTTTGGAATAATCATCTTAATAATCAATGATGTATGGAGACTCACCTAGC
ACACATTTGAAGGGATGTCTTGTTTTGAGCAATTATTTTAAACACTAGTA
AAATGAAGAATTAATTATCCTGTACAGAGACTCAGCAAACTAATGCTTTA
GTCTGTCAAACCATCTGTTCAGGCCCACCCTTCGCAGATTTTGGCATTGT
TCAGGATGGTGGAGACAGTACTTCTGATGCTGATGCTGGAGACAGGCTCT
GATGCTGATGCTGGAGACAGGCTCAGATGATGATGCTGGAGACAGGCTCT
GATGCTGATGCTGGAGACAGATTGCTCTTTTGTATTTACCATCTTACCTT
CCAAAGGCATGGTAAAAAACAAGCATATAAAAGACCTGTCTCCTTGTTAG
TGCGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCT
CAGAAAATTGGACATAGTATTACCGGAAGATCCAGCAATACCTCTTCCGG
GCATATACCCAGAAGAAGCCCCCACCTGCTAAAAATGATC

NACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTAGTCACAAGCTCTTCACCACCA
ACTCCAAACTTGCTCTGAGGTTTTTATTCCATCATTAAATGATTGTCTGA
CCCTTCTGGAAATCCTACCCAAAATGCTAGTTTTACTTCTTCTCTAAGCT
ACTTTAGTGTTCTACACACCCGTCCTTCCGAGAGTTGTTGGGTCAATTGT
CTATGGTTCAGTTTGTCTAGGGACAGACAAATCTACCTAAATCACAGGAC
TAGTAAGTTAGCCAACTTCCTCTATAAAGGGCTAAGCTTGAATGAAGCAA
TAATCACTGACAAATCAAAGATACACAGGTAAGAAAAGGGATGGGACAAA
CCCAGACACTATTACATATGTCAGCAAGATTTTGCTGACCAGATCCTGAT
ATAGCCCTCTCTTCTGAGGCTATGCCAGTGCCTGGCAAATACAGAAGTGG
AGGCTCACAGTCATCTATTGNATGAAACACAGGGCCCCTAAAGAAGCAGC
TAGAGAAAATACCCAAGGAGCTGAAGGGGTCGGCAACCCCATAGAAGGAT
CAACAATCTGAACTAACCAGTACCCCACAGAACTGTGTCTCTAGTTGCAT
ATTGAGCAGAGGATGGCCTAANCGAAAATTATTGGGAGAAACCCCCCTGG
TCTTGGGAAAAACATATGCCCCCACACTTGGAAATAGCTATTCCCCGCCA
TTATTACCGTCGTATTTTCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_d14.b1 MSMg01no448_d14.b1 CHROMAT_FILE:
MSMg01no448_d14.b1 PHD_FILE: MSMg01no448_d14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:25 2005
         (518 letters)



>mm_chr1_179228212_179229129
          Length = 918

 Score =  959 bits (496), Expect = 0.0
 Identities = 508/512 (99%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcagcttattgtcttgggcagtatcctggaaaacacaatccagaagagtatgaata 66
           |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 gaattcagcttactgttttgggcagtatcctggaaaacacaatccagaagagtatgaata 659

                                                                       
Query: 67  ttaaaactatagtctttttacaaattgaaaaacaccttaaactaaatgagcctgtaaggc 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 ttaaaactatagtctttttacaaattgaaaaacaccttaaactaaatgagcctgtaaggc 599

                                                                       
Query: 127 aattttgttctttaatgccaacccacagatgtttggaataatcatcttaataatcaatga 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 aattttgttctttaatgccaacccacagatgtttggaataatcatcttaataatcaatga 539

                                                                       
Query: 187 tgtatggagactcacctagcacacatttgaagggatgtcttgttttgagcaattatttta 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 538 tgtatggagactcacctagcacacatttgaagggatgtcttgttttgagcaatcatttta 479

                                                                       
Query: 247 aacactagtaaaatgaagaattaattatcctgtacagagactcagcaaactaatgcttta 306
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 478 aacactagtaaaatgaagaattaattagcctgtacagagactcagcaaactaatgcttta 419

                                                                       
Query: 307 gtctgtcaaaccatctgttcaggcccacccttcgcagattttggcattgttcaggatggt 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 gtctgtcaaaccatctgttcaggcccacccttcgcagattttggcattgttcaggatggt 359

                                                                       
Query: 367 ggagacagtacttctgatgctgatgctggagacaggctctgatgctgatgctggagacag 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggagacagtacttctgatgctgatgctggagacaggctctgatgctgatgctggagacag 299

                                                                       
Query: 427 gctcagatgatgatgctggagacaggctctgatgctgatgctggagacagattgctcttt 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 gctcagatgatgatgctggagacaggctctgatgctgatgctggagacagattgctcttt 239

                                           
Query: 487 tgtatttaccatcttaccttccaaaggcatgg 518
           ||||||||||||||||||||||||||||||||
Sbjct: 238 tgtatttaccatcttaccttccaaaggcatgg 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no448_d14.g1 MSMg01no448_d14.g1 CHROMAT_FILE:
MSMg01no448_d14.g1 PHD_FILE: MSMg01no448_d14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:25 2005
         (461 letters)



>mm_chr1_179084908_179085768
          Length = 861

 Score =  862 bits (446), Expect = 0.0
 Identities = 457/461 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctagtcacaagctcttcaccaccaactccaaacttgctctgaggtttttattccatcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctagtcacaagctcttcaccaccaactccaaacttgctctgaggtttttattccatcat 260

                                                                       
Query: 61  taaatgattgtctgacccttctggaaatcctacccaaaatgctagttttacttcttctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaatgattgtctgacccttctggaaatcctacccaaaatgctagttttacttcttctct 320

                                                                       
Query: 121 aagctactttagtgttctacacacccgtccttccgagagttgttgggtcaattgtctatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagctactttagtgttctacacacccgtccttccgagagttgttgggtcaattgtctatg 380

                                                                       
Query: 181 gttcagtttgtctagggacagacaaatctacctaaatcacaggactagtaagttagccaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttcagtttgtctagggacagacaaatctacctaaatcacaggactagtaagttagccaa 440

                                                                       
Query: 241 cttcctctataaagggctaagcttgaatgaagcaataatcactgacaaatcaaagataca 300
           ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttcccctagaaagggctaagcttgaatgaagcaataatcactgacaaatcaaagataca 500

                                                                       
Query: 301 caggtaagaaaagggatgggacaaacccagacactattacatatgtcagcaagattttgc 360
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 caggtaagaaaagggatgggacaaacccagacactattacttatgtcagcaagattttgc 560

                                                                       
Query: 361 tgaccagatcctgatatagccctctcttctgaggctatgccagtgcctggcaaatacaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgaccagatcctgatatagccctctcttctgaggctatgccagtgcctggcaaatacaga 620

                                                    
Query: 421 agtggaggctcacagtcatctattgnatgaaacacagggcc 461
           ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 621 agtggaggctcacagtcatctattggatgaaacacagggcc 661


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space:   383801
Effective search space used:   383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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