BAC Information

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BAC

Clone NameMSMg01-448D19
Chromosome1 (Build37)
Map Location 90,179,366 - 90,179,828
singlet/doubletsinglet
Overlap genenone
Upstream geneEfhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822
Downstream geneTrpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347, Sh3bp4, LOC383542
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448D19.T7 (MSMg01no448_d19.b1)MSMg01-448D19.TJ (MSMg01no448_d19.g1)
ACCAG536499AG536500
length738751
length of high quality
(start - end)		485 (48 - 532)449 (76 - 524)
definitionCHROMAT_FILE: MSMg01no448_d19.b1 PHD_FILE: MSMg01no448_d19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:26 2005CHROMAT_FILE: MSMg01no448_d19.g1 PHD_FILE: MSMg01no448_d19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCATGCTCCCTCCCTTTCATTGTATAGGTTAGATCATCTAGTAC
TTTCTGCTTCCTGCTTTATGCTTCTGCAGCATCCACTCCTAGATCTGTTT
ACAGGCTTACGTTTACAAGGTTTGACTTTCACGTTTGGCGCTGACTTTAT
TCACGATTGCTTTAATGCTTCATTGTTATCCGACTTATGGAACTACCTGC
TTGGTTACTCTCTGTGCGCTGAATCGCAATGTGAGAGTTTTAGACTAGGT
TTGCTCTCCCAACCTACAGCATTGTGCAGCAAGTTTAAGTAGGATTCTGG
TCATTATGCCTGGGCTCAAGGTCCCCAACCCCTTTCATATGGACTTTTGA
AGAACATTCCAGATGCAAACCATGGCATCCATTCTGAGCAACCCTCAGAG
TTATCAGTGAGTCTCATGATGCTCTTATTACATGTTTTGTCTTGGATAAT
ATGATGGGATTGAAAAAAAATATATGATGGCATTGACTGGCGGCTCCAAA
GACAATTTACTTCCATTTAGTAATAACAGTAACATGCCCACTGAGCATAA
TGTGCTAAGGGCTTTGGATCTATTGATCTTTTCATTGTCTCACTAAAGGA
GGGAGGTGACTTGTGTTGAAGACCCCATTCTGCTATCTGTATCCCACCCT
ATCCTTGTGCACGTGTCCGAGTCTCCATGATGCCTTTC

NTCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGGTTAGCGGGTGGGCTGACCAACT
CAGCTAGCGTCCAGGCCCAGGTCCAGGGCTTGGAGTTGACACCACAACAC
CTACCCCATGTATGAACTGCTGGAGCTCATAAAGGGGCCGGTCCTACAGA
TCCAAAGCTGATAACTGAGAGGAACCCCAGAGAGGCTCCAGTACCAATAG
TGGAACCAGACTCAAACCAGACCAATGACTCATTCAATAAACACTGGCAA
GTAAAGATGCTTAGTCAAAATTTCGCACAGTGTGATACACCATGACACAC
TGCAGCTTGCAGGGCGAGATCTTCCTTCCTTCCTTCCTTCCTTCCTTCCT
TCCTTCCTTCCTTCCTTTCTTTCTTACTTTCTTTCTCTGTTTCTGTTTTT
ACTTTTTTGTTTTCTTGAGGGCTGGGGAGAAGAAGGTTTCAAGGGCTAAG
GGCAGGCAGATACAGAGTCAGGGAGATAGATGAATGTGATTGGGGGTCCC
TGATGTTTAATCCCCCACAACTTTTTCTTTATTTTTTCCTCTCCTTTCTT
ATTCGCTGCTCTTCCTCTCTCTTTCCCCTTTTCCCCCTTTCCACCTTATT
CTTTCTTTTTTTCTTCTCCTTACCCTCCCCCCTTTCCTTTTTTAACTCAG
TTTTTTTTCTCTTCCTCCATCTATTTTCTATTTCACACTTTTTCTCTTTC
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_d19.b1 MSMg01no448_d19.b1 CHROMAT_FILE:
MSMg01no448_d19.b1 PHD_FILE: MSMg01no448_d19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:26 2005
         (485 letters)



>mm_chr1_90179163_90180047
          Length = 885

 Score =  880 bits (455), Expect = 0.0
 Identities = 461/463 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccatgctccctccctttcattgtataggttagatcatctagtactttctgcttc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccatgctccctccctttcattgtataggttagatcatctagtactttctgcttc 263

                                                                       
Query: 64  ctgctttatgcttctgcagcatccactcctagatctgtttacaggcttacgtttacaagg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctgctttatgcttctgcagcatccactcctagatctgtttacaggcttacgtttacaagg 323

                                                                       
Query: 124 tttgactttcacgtttggcgctgactttattcacgattgctttaatgcttcattgttatc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tttgactttcacgtttggcgctgactttattcacgattgctttaatgcttcattgttatc 383

                                                                       
Query: 184 cgacttatggaactacctgcttggttactctctgtgcgctgaatcgcaatgtgagagttt 243
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 384 cgacttatggaactacctgcttggttactctctgtgtgctgaatcgcaatgtgagagttt 443

                                                                       
Query: 244 tagactaggtttgctctcccaacctacagcattgtgcagcaagtttaagtaggattctgg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tagactaggtttgctctcccaacctacagcattgtgcagcaagtttaagtaggattctgg 503

                                                                       
Query: 304 tcattatgcctgggctcaaggtccccaacccctttcatatggacttttgaagaacattcc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tcattatgcctgggctcaaggtccccaacccctttcatatggacttttgaagaacattcc 563

                                                                       
Query: 364 agatgcaaaccatggcatccattctgagcaaccctcagagttatcagtgagtctcatgat 423
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agatgcaaaccatggcgtccattctgagcaaccctcagagttatcagtgagtctcatgat 623

                                                      
Query: 424 gctcttattacatgttttgtcttggataatatgatgggattga 466
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gctcttattacatgttttgtcttggataatatgatgggattga 666


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space:   415625
Effective search space used:   415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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