BAC Information

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BAC

Clone NameMSMg01-448D23
Chromosome1 (Build37)
Map Location 180,076,558 - 180,077,021
singlet/doubletsinglet
Overlap genenone
Upstream geneAkt3, Zfp238, EG631449, LOC100040770, 1700016C15Rik, Adss, EG631584, EG545391, LOC666262
Downstream gene5830417C01Rik, LOC666284, 4930527J03Rik, LOC666295, B230369F24Rik, LOC669454, 2310005N03Rik, Hnrpu, Efcab2, D230039L06Rik, Kif26b, Smyd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448D23.T7 (MSMg01no448_d23.b1)MSMg01-448D23.TJ (MSMg01no448_d23.g1)
ACCAG536507AG536508
length718790
length of high quality
(start - end)
466 (74 - 539)398 (79 - 476)
definitionCHROMAT_FILE: MSMg01no448_d23.b1 PHD_FILE: MSMg01no448_d23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:27 2005CHROMAT_FILE: MSMg01no448_d23.g1 PHD_FILE: MSMg01no448_d23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:27 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
AACGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGAGAATCCG
CGGAATTCTTGACTTTTACCAGCTAGGGGGGGTTGAAAAGGAATGGCTGA
GGAGGAAAAGACACTGCTTTGGAGCCTGATGACCTGAGTTTGACCCCTGC
AACCCAGGAAGTGGAAGGAGAGAACAGGGTCTGAAAGAGGTCTGACAACT
TAACTTCCCCCTCCAATAAACGTTAAGGTTTGGTTTTGTTTCTTTCCTTT
TCTAAAGAATTGAGTGTAAAAATGCTTAAGGACAAAAGGGTCACTAGGAG
AATTTGTGAAGGACCACAGTGCCCTCTTGTGGAAAAAGCATGCATTGCAT
GATATGTCATTTTAGAGTTTTGCTTCACTGTGAATAAGTGCCAGAGAGAC
TTCCTTCCATGGGCTTATTTTAATACATTTTCGTTAGGGTTGACTAGAAT
TCTAATTAAATCCGAGAATGCAGGAATGTCACTAATTGGCATCTAGATTC
GCTACTGTTGGCAATTTTCCTATGGAAATCCTACTTTGGGAATTGAGGAG
ACCTCCTTACTGATCTCTTGGAGGATCCCTTCTGCTAACTAGCTCTTTTA
TTAGCTATGTTTATAGGCACATACCAGCTGGACTATGGAAGAATTTTCCA
GCGTGTTCAGTACCCTGTTGTTTCCTCACGAGGGTCTTTTGCGTTTGTCC
ATTCTTTTACTGAAGCAC
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGGGATACAAAGATAAGAAAT
CTAGTGTAACTTCTTGTATTAAATAGAATATTATATATGAATCAATATTA
TGGGCATTATATATGCAGATTTATGACGGACTCATGTACTTACAGAGGTT
GAGAAGCACTGTGATAGGCCAACCCTCTGCAAGCTCCCCTGAAGGCTGTG
AGGTTCCAGTCCTAGCCCAAAGTTCTGAGAACTTGCATGGAGAGTACTAG
TGTGTTAAGTCCTGGTCCAAGTCTGAAGGCCTGGTTCAGTCCAAATGAGT
TTCCTGCATTTAGATACTTAGTCACTAATTGGTGGCCCTGTTTGGGTAGG
TTTAAAAGATGTGGCCTTGCTAGAGGAAATGTCATTAAGGACAGGATCTG
AGATTTCAAAAGCCACATATCACTCCCAGTGTTCTCACTTGTACGTATAG
TTCCAGATGGAAGCTCTTAACTTGCTGCTTTCAGCCCCCTTGCCTGCTTT
GCATGCTTTCCCCTCAGGATTTTTCCCTTTGTGGCCGGAACAGCCCCTAA
TGGGACACCCGCCCTCCTTGGTAACCTGCCCACCCTCATTCCCAACCCTG
TTTCCCCTGTTCCCCCCCTCTTTCGTCTCCTCTTTCTCTCGTCAGGATAG
GCCGTTCTTTTCCCTTACTTAATAACCCCGCTCTTTTTTCCCTATTCTTC
CCTCCCGTTCATTCTCGTTGCCGCCTTTTCTCCCACCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_d23.b1 MSMg01no448_d23.b1 CHROMAT_FILE:
MSMg01no448_d23.b1 PHD_FILE: MSMg01no448_d23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:27 2005
         (466 letters)



>mm_chr1_180076256_180077121
          Length = 866

 Score =  866 bits (448), Expect = 0.0
 Identities = 460/464 (99%)
 Strand = Plus / Minus

                                                                       
Query: 3   gggggggttgaaaaggaatggctgaggaggaaaagacactgctttggagcctgatgacct 62
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 766 gggggggttgaaaaggaatggctgagcaggaaaagacactgctttggagcctgatgacct 707

                                                                       
Query: 63  gagtttgacccctgcaacccaggaagtggaaggagagaacagggtctgaaagaggtctga 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 gagtttgacccctgcaacccaggaagtggaaggagagaacagggtctgaaagaggtctga 647

                                                                       
Query: 123 caacttaacttccccctccaataaacgttaaggtttggttttgtttctttccttttctaa 182
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 646 caacttaacttccccctccaataaatgttaaggtttggttttgtttctttccttttctaa 587

                                                                       
Query: 183 agaattgagtgtaaaaatgcttaaggacaaaagggtcactaggagaatttgtgaaggacc 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 586 agaattgagtgtaaaaatgcttaaggacaaaagggtcactaggagaatttgtgaaggccc 527

                                                                       
Query: 243 acagtgccctcttgtggaaaaagcatgcattgcatgatatgtcattttagagttttgctt 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 acagtgccctcttgtggaaaaagcatgcattgcatgatatgtcattttagagttttgctt 467

                                                                       
Query: 303 cactgtgaataagtgccagagagacttccttccatgggcttattttaatacattttcgtt 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 cactgtgaataagtgccagagagacttccttccatgggcttattttaatacattttcgtt 407

                                                                       
Query: 363 agggttgactagaattctaattaaatccgagaatgcaggaatgtcactaattggcatcta 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 agggttgactagaattctaattaaatccgagaatgcaggaatgtcactaattggcatcta 347

                                                       
Query: 423 gattcgctactgttggcaattttcctatggaaatcctactttgg 466
           |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 346 gattcgctactgttggtaattttcctatggaaatcctactttgg 303


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)