TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAAATACGCGGAAT
TCTTCAGTCTCTTTCTCACATTCTGGAACAAAGTCATCAGATGAAGTAGT
AAATGAGGTTGCTGGAGATATCCTGAGTAAACTTCCAAACAACTTTGATG
TTGAAGCTGCCATGAGGAGATACCCAACAACTTACACTCAGAGCATGAAC
ACTGTCCTTGTCCAAGAGATGGGACGTTTCAATAAGTTGCTGATAACCAT
AAGAGAATCATGCATTAATATTCAAAAAGCAATCAAGGTAAGGTGAACTG
AGTAAAAAAAAATCTCTAAGTTATTCCTTGCACTTTCATCAATTTAGCAA
ATATTTACTAGTCTCAGGTACTGGAAAGTACTATTCTTGATCTAAAGTAT
AGGAAACAAGTCCCTGAACTTTATTAGCTTATAGGATTCTGAGGATAACA
GCTAATAAAGAGATATATAAGTACAGAGGGCATGCTAGACAACACTGTGT
ACTGGGAAGAGTGCATGCTAAGGAGACATTGCGCCTCACAGAGAACAAGC
TTACATGCTAGCCATGTAGATATATCAAGCATTTATTCAATATATACAGG
ACAGTCAAAGATTTATTTTATTTCTCATTTGTCCGTGCATGTGTTTGCGC
GTATGCACTCGTGTGTGTGTGCTCTAGTGCCGGCGTGTGCGCCTGCCGTC
TGTCTTGTCCTTTCCCCCTTTTTTTCTCCCTTTTTTACCCTCATCCTTAT
CCTCTCTCTTCC

NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATTTGGTTCAAATAATTTCA
GGAAGAAGGTTTTAAGTAATGGTTTTAGTTACTTTGCTAGACAGATGTAA
TAAAGTTAGAATCAAGACTAGAATGTGCCCACTCCTCATATAGTAAGTAA
AGGCTGCATAGTAAGAAACACAATGAGCTTTCATAATTACACAAAAAAGT
GAAATAGGCTTGGGACAAATTTGTGTTCAAGGAAAAACATTTAGGTCTAA
GGATAACCACAGGTGTGCTTTTATTATAAGGCAAGGCCATGTAAAAACTG
TTACTTTGAACTTGTACCGAGCATGTTAGAATGAAATTTCACTTTGAACT
TACTATCAACTTCTTTCTGTAACTCCCATTTTATCTATGAGGAAATCTCT
AAAGAATCTTTTCTCTAAGAATGTTAAAACAAAAAGGCCAGAGAAAAGAA
ATAAAGTTGTTGGTTGAATAGTTTGACTTGGGGGCTCTTGCCAGCCACTT
ACCCATCCACCCATCCATCTATCCATCCATCCCAATGTATAGTTTGTCTG
GATGGATGTGTTTACGAAAATGTGGATGTTTTCAAAAACACCCGGCTCTT
TTTTTTTTTTTTTTTTTCCCTACTCCTCCTTCCTTCCCTTTTTTAAACAC
CCCTTTTTCTTCCTTCTCCCAAACTCTCTCTTTTTTTCCCCTTTTTCTCT
CTCT

Query= MSMg01no448_f09.b1 MSMg01no448_f09.b1 CHROMAT_FILE:
MSMg01no448_f09.b1 PHD_FILE: MSMg01no448_f09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:35 2005
         (435 letters)



>mm_chr1_46409475_46410310
          Length = 836

 Score =  804 bits (416), Expect = 0.0
 Identities = 431/436 (98%), Gaps = 1/436 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctggaacaaagtcatcagatgaagtagtaaatgaggttgctggagatatcctgagtaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctggaacaaagtcatcagatgaagtagtaaatgaggttgctggagatatcctgagtaaa 260

                                                                       
Query: 61  cttccaaacaactttgatgttgaagctgccatgaggagatacccaacaacttacactcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttccaaacaactttgatgttgaagctgccatgaggagatacccaacaacttacactcag 320

                                                                       
Query: 121 agcatgaacactgtccttgtccaagagatgggacgtttcaataagttgctgataaccata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcatgaacactgtccttgtccaagagatgggacgtttcaataagttgctgataaccata 380

                                                                       
Query: 181 agagaatcatgcattaatattcaaaaagcaatcaaggtaaggtgaactgagtaaaaaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agagaatcatgcattaatattcaaaaagcaatcaaggtaaggtgaactgagtaaaaaaaa 440

                                                                       
Query: 241 a-tctctaagttattccttgcactttcatcaatttagcaaatatttactagtctcaggta 299
           | |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatctctaagttaaaccttgcactttcatcaatttagcaaatatttactagtctcaggta 500

                                                                       
Query: 300 ctggaaagtactattcttgatctaaagtataggaaacaagtccctgaactttattagctt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctggaaagtactattcttgatctaaagtataggaaacaagtccctgaactttattagctt 560

                                                                       
Query: 360 ataggattctgaggataacagctaataaagagatatataagtacagagggcatgctagac 419
           ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct: 561 ataggattctgaggataacagttaataaagagatatataagtacagagggtatgctagac 620

                           
Query: 420 aacactgtgtactggg 435
           ||||||||||||||||
Sbjct: 621 aacactgtgtactggg 636


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 836
Length adjustment: 9
Effective length of query: 426
Effective length of database: 827
Effective search space:   352302
Effective search space used:   352302
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)