BAC Information

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BAC

Clone NameMSMg01-448J02
Chromosome1 (Build37)
Map Location 52,859,206 - 52,859,459
singlet/doubletsinglet
Overlap geneInpp1
Upstream geneMyo1b, EG667010, LOC667014, Stat4, LOC100042634, Stat1, Gls, LOC546735, Nab1, LOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik
Downstream geneHibch, 1700019D03Rik, Gdf8, 1700019A02Rik, Pms1, LOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858, EG627866, LOC100042162, Dnahc7, Stk17b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448J02.T7 (MSMg01no448_j02.b1)MSMg01-448J02.TJ (MSMg01no448_j02.g1)
ACCAG536750AG536751
length805789
length of high quality
(start - end)
269 (46 - 314)332 (81 - 412)
definitionCHROMAT_FILE: MSMg01no448_j02.b1 PHD_FILE: MSMg01no448_j02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:53 2005CHROMAT_FILE: MSMg01no448_j02.g1 PHD_FILE: MSMg01no448_j02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCG
GAATTCTTGCGACGATTTGTATATGAAAAGAATTGGGGGCAACACTGGCA
CAAATTTCTTCAGGTTTCTATGGAAATTATCTTTCAAATAACTTTAAAAC
GCAAATGTAATGTATTTGCCTTACTCACTCTATACAGCCTCTGTTGGAGG
CCAGTTGGTAGGAGCCTTAGTGAAACCTTACAGGGAAGATGACTCACATT
CAGGGTTAGGCAAGTTTGTTGTTGGTAGTGGTTGCTTTTATTTTTAGGTA
GGTGTGTAGGTGTGNNNNNTTTTTTTTTTTNTTTNTNNTNNTTGTTTTTT
TTTTTCTTTTTTTTTTTTTTTTTTTTTTTTGGTTGGGTGNTTGTGTTTTT
TTTGCGTGGTTTCTTGGCGTTGCGTTTTTTCTTTTCTCGCCCTCTCCTTG
CCTTTTTCCTCTCCTTGGGCGGTTTTGCTTGCGTGTTCTCCCGTCCCTTT
TCTTCTCTGTTTTCGTCTCCTCTGTTTTTTCCGCGTCGTTTTTTTCTCTC
TTCCCGCTTCTTTTTTTCCCCCTCTTCTTCTCCCGCTCCTTTTCCCGCCC
CTTCTCGCCCCGCCCCGTTTCTCCGTTTGGCCTCTCCCCGATTTTGGCCG
ATCTTGGCTCCCCTTCCCCGTTTTTACCTCGCTTATCACCCTTCCCCTTG
CATTCTTCGATACGCCTTTTCTGTTTTACTCATTATATGGACTTATACTT
TATTTCTTCTACCTGGCTTTTTTCACTCGCCTACGCGTGGCCTGACTATA
ACGTC
TTACCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTGTATCTCCAATCATCCA
TTGGATGGAGCACAAGGTCCCCAATGAAGGAGCTAGAGAAAGTACCCAAG
GAGCTGAAGGGGTTTAAAGCCCCATAGGAGGAACATCAAAATGAACTAAC
CAGTACCCCCACAGCTCTTTGGAACTAAACCACCAATCAAAAAAAAAAAA
AAAAAAAAACACATGGTGGAACTTGTGGCTCTAGCTGTATATGTAGCAGA
GAATGGCCTAGTCAGTCATCATTGTTAGAAGAGGCCCTAGGTCCTGTGAA
GGTTCTATGCTCCAGTATAGGGGAATGCCAGGATCAGGAATGGGAGTGGG
TGGATTAGGGGAGCAGTNTCTATNNTCTCTTGTTTTCTCGCCTCGTTTCG
TCCCCCCCTCCGCTCTGTTCCCTTATCCCTTTTCTTCCCCTTTTTTTCTT
TTCTCCTTTTTCCTCCTCTCTTGTTCTTTCCTCACCCCGCTCCCGCATAG
CTCTTCTCCCCCCTTTTTACTTCACCCCTCTCCTCGTTCCCCTCTCTCTT
TCTCGTCGCTTTCTTTCTTTCCTTTTTATCCCCTCATTTCTTTATCCTTT
CTCTCTCACAATCTTTCTGCCTTCATTTTTTGTTGTCTTTTCGTTCCCGT
TTTCTCTCTTTTTTTTTTCCGCCCCCCTCCCCTTCTTCCTTCTCATTTTA
CCCCTCCCCGTTTTATCCCCTTCCTCTCTGTCCCCTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_j02.b1 MSMg01no448_j02.b1 CHROMAT_FILE:
MSMg01no448_j02.b1 PHD_FILE: MSMg01no448_j02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:53 2005
         (269 letters)



>mm_chr1_52859002_52859670
          Length = 669

 Score =  451 bits (233), Expect = e-131
 Identities = 252/265 (95%), Gaps = 11/265 (4%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggaattcttgcgacgatttgtatatgaaaagaattgggggcaacactggcacaaatttct 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattcttgcgacgagttgtatatgaaaagaattgggggcaacactggcacaaatttct 264

                                                                       
Query: 65  tcaggtttctatggaaattatctttcaaataactttaaaacgcaaatgtaatgtatttgc 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 265 tcaggtttctatggaaattatctttcaaataactttaaaacgcaaatgtaatttatttgc 324

                                                                       
Query: 125 cttactcactctatacagcctctgttggaggccagttggtaggagccttagtgaaacctt 184
           ||||||||||||||||||||||||||||           |||||||||||||||||||||
Sbjct: 325 cttactcactctatacagcctctgttgg-----------taggagccttagtgaaacctt 373

                                                                       
Query: 185 acagggaagatgactcacattcagggttaggcaagtttgttgttggtagtggttgctttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 acagggaagatgactcacattcagggttaggcaagtttgttgttggtagtggttgctttt 433

                                    
Query: 245 atttttaggtaggtgtgtaggtgtg 269
           |||||||||||||||||||||||||
Sbjct: 434 atttttaggtaggtgtgtaggtgtg 458


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 669
Length adjustment: 9
Effective length of query: 260
Effective length of database: 660
Effective search space:   171600
Effective search space used:   171600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)