BAC Information

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BAC

Clone NameMSMg01-448J18
Chromosome1 (Build37)
Map Location 59,839,124 - 59,839,533
singlet/doubletsinglet
Overlap geneBmpr2
Upstream geneLOC100042431, Casp8, EG667419, Trak2, Als2cr2, 4930408G06Rik, EG667447, Als2cr11, Als2cr4, Mpp4, Als2, Als2cr7, Fzd7, Gm973, Sumo1, LOC100042476, Nol5, B430105G09Rik, LOC100043007
Downstream geneAls2cr13, LOC100042496, Ica1l, Wdr12, Carf, Nbeal1, Cyp20a1, Abi2, Raph1, LOC100043027, LOC100042533, Eif4a-ps4, Cd28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448J18.T7 (MSMg01no448_j18.b1)MSMg01-448J18.TJ (MSMg01no448_j18.g1)
ACCAG536782AG536783
length968788
length of high quality
(start - end)		---410 (78 - 487)
definitionCHROMAT_FILE: MSMg01no448_j18.b1 PHD_FILE: MSMg01no448_j18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:56 2005CHROMAT_FILE: MSMg01no448_j18.g1 PHD_FILE: MSMg01no448_j18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACCCCAATCATAGGCCCTACCGATACCATACACTACACACCACCAGATTT
ACCGCGAGTACCGCGCGCGGCCCCGGTNCAACACCTGACCCNCAACACCC
AACCCCAGAAACACTATACAATACCCGCCGTACACTAGTCCACCGCTTAT
CCGTTCGTCCCCCCCCTAGCCCCTCCCGCATCCTTAGCCCCCCCGCCCCC
CCCCCTNATCCACACCCATTCACCTCTTCTAGTAGCCGTCCTACCGTCCC
CACCCCCTCCCCCTAACCTACCCCCCTGCACCCATATCTATATCGCCTAC
CCCCCAATCCCTATACCCTTTTCCCCTCCTCCAACCCCCAATACCCCATT
ACCCATAGCCCCCCCCTCCCCAAAAAAAAAAAAACAAATCTTTTTGAGCC
CCCCGCGAACCCCCCCGCCCCCCCTTTAAAATTAACCCGGAAAAACTCTC
CCAACCCTTTAATTTACTGCCCTCCAANNAAAGAAAAACCCCGGCCGGGG
AAAATTTCCANTAACCATTTTATCGCGCCAGNAAGCCCTGAAATTGGGGN
AAATGAAGAAAAAAGCCCCAAAGGNNGGGCCAAAATTTTTTTTTGAACCA
AGCCCAAATTTTTTTCCAAATCCCTCACACCCCTAAAGGAAATCCCCAAA
ACCAAAATTTTTTTTTTTTTTTAAAAAAAAGGTCCCCCAAATTTTACCCC
CAAACCCAGTTCCCTTAACCAAAAAATGTAAAAGTTTTTAAAAAAAAACC
CCCCCAACACCCGCGCNGTTTTTTTTTGGGCGTATTTGGGGGCCCCCCCC
TTGGAAAAAAAACAAGGGGCCCTTTTTAAAAAATAAAAAACCCCCCACAA
AAAATGTGTCCCCCCAAAAAACAAAAAAAAACCCCCTCCGAAGAGAGGGG
GGAGAACCCCCCTTTTCTCCCCCCCCCCCCCCACAAAAAAAAAAAAGAAG
GTCCCTCTTGGTGGGTAG

NNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTCCTCCTGTCTTAGCTTCT
CAGGCATTTGGTTGTAGATCTGCACCACCATATCTAGGCTTGGGGATATT
ACTTAACGTAGGCAATTGTACTTGAAGGAGAACTCTGAATAATGAAATAA
GTAACAATAGCGAATGGATGTTAACAAACATCAGTGCTACATTACTGGGA
GAATGTCCTTTTGTTCTGCATTTTTCATTTTGTAAATTAGGTAAGCTGTT
GTTGAAATCTTCACAGCCTATTTGACTTATTCAGGCCACTAATTATAGAA
TTTGTTGTTTAGAGCATGACATCTTTTTGTTAAGGTGCTAAGAGAGATTC
CTGTGAGATTCAGCTTAGTCATGTCCTTAGCAATTGTCTTGAGAATTATG
TTGGAAAAGCATTGAATTTCTACAGCAAATGAATATTTCATTGTTGTTTA
AAGAAAAGAGTTCTATATAGATTCACAAAAAACAAACCCTGAAACCTATT
AAATAATACTTTATATATTAGATACTGCCTGAGATATTAGTAACCAGGGG
GGATAGATATATGTTTTAATATTTACCCTCCTCCTTTTGTGAGACCTAAC
CAGGAGTCCCCGGGGGCTGAAGGGCTTGGGGTCATTTTCTTACCTTATCC
TCCCCCTTATTCCCATTCCTTCCTTCCACTCCCCCCACTCTCCTTCTTCA
TGTGGGCGTGGCTTCTTTCCCCTTTTCTTTTCCCCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_j18.g1 MSMg01no448_j18.g1 CHROMAT_FILE:
MSMg01no448_j18.g1 PHD_FILE: MSMg01no448_j18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:56 2005
         (410 letters)



>mm_chr1_59838924_59839733
          Length = 810

 Score =  785 bits (406), Expect = 0.0
 Identities = 409/410 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgtcctcctgtcttagcttctcaggcatttggttgtagatctgcaccaccatatctag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgtcctcctgtcttagcttctcaggcatttggttgtagatctgcaccaccatatctag 260

                                                                       
Query: 61  gcttggggatattacttaacgtaggcaattgtacttgaaggagaactctgaataatgaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcttggggatattacttaacgtaggcaattgtacttgaaggagaactctgaataatgaaa 320

                                                                       
Query: 121 taagtaacaatagcgaatggatgttaacaaacatcagtgctacattactgggagaatgtc 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taagtaacaatagtgaatggatgttaacaaacatcagtgctacattactgggagaatgtc 380

                                                                       
Query: 181 cttttgttctgcatttttcattttgtaaattaggtaagctgttgttgaaatcttcacagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttttgttctgcatttttcattttgtaaattaggtaagctgttgttgaaatcttcacagc 440

                                                                       
Query: 241 ctatttgacttattcaggccactaattatagaatttgttgtttagagcatgacatctttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctatttgacttattcaggccactaattatagaatttgttgtttagagcatgacatctttt 500

                                                                       
Query: 301 tgttaaggtgctaagagagattcctgtgagattcagcttagtcatgtccttagcaattgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgttaaggtgctaagagagattcctgtgagattcagcttagtcatgtccttagcaattgt 560

                                                             
Query: 361 cttgagaattatgttggaaaagcattgaatttctacagcaaatgaatatt 410
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttgagaattatgttggaaaagcattgaatttctacagcaaatgaatatt 610


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 810
Length adjustment: 9
Effective length of query: 401
Effective length of database: 801
Effective search space:   321201
Effective search space used:   321201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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