BAC Information

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BAC

Clone NameMSMg01-448N08
Chromosome1 (Build37)
Map Location 159,425,731 - 159,426,101
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039026, Abl2, Tor3a, C530043G21Rik, LOC433368, Ralgps2, Angptl1, 4930439D14Rik, 1700057K13Rik, Rasal2, Gabarapl2-ps1_1522.1, 2810025M15Rik, BC026585
Downstream geneLztr2, LOC664935, LOC100039217, 6430517E21Rik, Astn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448N08.T7 (MSMg01no448_n08.b1)MSMg01-448N08.TJ (MSMg01no448_n08.g1)
ACCAG536952AG536953
length779770
length of high quality
(start - end)		40 (73 - 112)376 (83 - 458)
definitionCHROMAT_FILE: MSMg01no448_n08.b1 PHD_FILE: MSMg01no448_n08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:14 2005CHROMAT_FILE: MSMg01no448_n08.g1 PHD_FILE: MSMg01no448_n08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATTTTTGTGCCCTCTATACCACTCCTATATTTTCCAAACCAGTGGAATT
CTATCATCCTTTTCACACATCTGACCTTAGACTAAGTCCCCAGCCAAATG
AACAGGACTGATATTCGGGCCTATGATACTGAGATACAGAGAAACAATGA
GGAAGGAAATCAGAAAATAATGAGACACTAACCACACCTAACTACTACAG
AGAGGCTGGGATAGAAAAACTGTAATGCTAGTTATATAAGATTATATGGA
TATTACTTACGGTTGGCTAATAAGGAACTCTCAAGTCCATCTTAGCAAGA
AGCCTGACTAAAAGACCAGTGTTTTTAGTTAAAATGGGGCTGGGCTGCAC
TACACTTCATTCATATCTTCCCTGGCTAATATGACTGAACTACTCCGATG
CCTCTGATGGTACCCTGACTCTTTGACTATTTCTCCTGTATCCTGTGCCA
GAAGCTGTTACTACCCTCTGCCCTTGTGTTTCCCTTTCTACCCCACTATT
CTATGTAATATCCTGCATATCTTTTCCACTGATTCCATTCGCTCCCCGAT
TATATTTACCTTTTTTTCTCCCCTCCTTTTTCCCAGCCCCTCCACCAATT
TTTTTTTTTATTCTTCACACTTTACTCAATTCTCCTCCGACTTCCCACTA
TTATTCTTTTTTAACTTTCCCCTTCTCATTTCTTTCCTCCTTTTTTTATT
CTACCTTTTTCCTCATCTCCTCATAAACTTCTACTTGCCGATTTTTAACT
AAACTACCCCTTCTCTTTACCTTCACATG

NNNNTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACAGGGACCCACCAGCCT
CTGCTTCCAGAGAGCTGGGGCTAAAGGACTGAGTCTCCACGCCCAGCTAC
AGTTGGAGTTTTGACTATACTTAGTCTTTCATATTGGCTCTAATTTGTTC
GCACCCCCATCTGGCACATAAATTCTTGCAGGCTAGGGCTGTGCATTTTA
TTTTTTTCTATATCAGTGTTGCAGGAATGGGCATTTAATCCCTGGTAATT
GATTGCTGGAGCACATTGCTGTAACTTTAGTTTTTTTAAAATCTATTTTT
AATGATGGTTCTTAAATGCTTTAACCGCTCTTGTAGCCCACTACCCACCA
GAGATGGTGGAAAAGGAAGGCTACAGGGGAAATGGACCTGTTTAGAAAGA
TTTTTTGGGGGGGGGGATAAATTCCTGTCTGTGTTGTCTGGAAATTGGTA
GTTCATGTCCTAGTGCTGCACGGTTTTTCTTCTATTCACCAAATCTTTTT
CGTATCTTCTTCCGGTCTAGTTTCCTACTAGCTCGGTTTACTATCTGGGC
CCTTTCTAAACCATTTCTGACCTCCCTTTTCTTTTCTTTTCGTCCTGATG
AGCCCCCCGTTTTCTTCTCGTTGTTTCTTTCTCTCTACACTCCCCCTTAT
TTACATTTCTTATCCGTAGCCCTGCTTTCCATCCTTTTTCCCCTCCCTTC
TATCCCTCCTCTTTCCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_n08.g1 MSMg01no448_n08.g1 CHROMAT_FILE:
MSMg01no448_n08.g1 PHD_FILE: MSMg01no448_n08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:14 2005
         (376 letters)



>mm_chr1_159425531_159426306
          Length = 776

 Score =  669 bits (346), Expect = 0.0
 Identities = 366/374 (97%), Gaps = 3/374 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagggacccaccagcctctgcttccagagagctggggctaaaggactgagtctccacgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagggacccaccagcctctgcttccagagagctggggctaaaggactgagtctccacgc 260

                                                                       
Query: 61  ccagctacagttggagttttgactatacttagtctttcatattggctctaatttgttcgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccagctacagttggagttttgactatacttagtctttcatattggctctaatttgttcgc 320

                                                                       
Query: 121 acccccatctggcacataaattcttgcaggctagggctgtgcattttatttttttctata 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| 
Sbjct: 321 acccccatctggcacataaattcttgcaggctagggctgtgcatttgatttttttctatg 380

                                                                       
Query: 181 tcagtgttgcaggaatgggcatttaatccctggtaattgattgctggagcacattgctgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcagtgttgcaggaatgggcatttaatccctggtaattgattgctggagcacattgctgt 440

                                                                       
Query: 241 aactttagtttttttaaaatctatttttaatgatggttcttaaatgctttaaccgctctt 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 aactttagtttttttaaaatctatttttaatgatggttcttaaatgctttaacctctctt 500

                                                                       
Query: 301 gtagcccactacccaccagagatggtggaaaaggaaggctacaggggaaatggacctgtt 360
           |||||||||||||||||||| ||||   ||||||||||||||||||||||||||| ||||
Sbjct: 501 gtagcccactacccaccagaaatgg---aaaaggaaggctacaggggaaatggacttgtt 557

                         
Query: 361 tagaaagatttttt 374
           ||||||||||||||
Sbjct: 558 tagaaagatttttt 571


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 776
Length adjustment: 9
Effective length of query: 367
Effective length of database: 767
Effective search space:   281489
Effective search space used:   281489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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