Query= MSMg01no449_a24.b1 MSMg01no449_a24.b1 CHROMAT_FILE:
MSMg01no449_a24.b1 PHD_FILE: MSMg01no449_a24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:33 2005
(544 letters)
>mm_chr1_153703555_153704498
Length = 944
Score = 928 bits (480), Expect = 0.0
Identities = 505/520 (97%), Gaps = 12/520 (2%)
Strand = Plus / Plus
Query: 25 aagccagcgatgagccagcagactaactgcgacctttttggaagctcatttctgtgctct 84
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 aagccagcgatgagccagcagactaactgcgacctttttggaagctcatttctgtgctct 284
Query: 85 ctggttcctgaacagctaactggaacttttctgtgttagacatgcttgcacaagtccatc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 ctggttcctgaacagctaactggaacttttctgtgttagacatgcttgcacaagtccatc 344
Query: 145 caaacaggtgctactgaacaagcagcaggcatgcgagccatgcagttatacatcacttct 204
|||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 345 caaacaggtgctactgaacaagcagc-------cg-----tgcagttatacatcacttct 392
Query: 205 gggtttaagagagggcagagtagatatgtctcctcccagagccagtgctccacattttcc 264
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 393 gggtttaagagagggcagagaagatatgtctcctcccagagccagtgctccacattttcc 452
Query: 265 aatacattgaaagaaaatgtgagtggaatttcatcaactggaacatctcagaaatgtgaa 324
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 453 aatacactgaaagaaaatgtgagtggaatttcatcaaatggaacatctcagaaatgtgaa 512
Query: 325 acctggacttttacaccaagatagaatgaaacgcaggaaaatagcttttgttgtacatgt 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 acctggacttttacaccaagatagaatgaaacgcaggaaaatagcttttgttgtacatgt 572
Query: 385 ttgttttgtacaattttgacccagcaaggataacttcatttctcagctcttatactctga 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 ttgttttgtacaattttgacccagcaaggataacttcatttctcagctcttatactctga 632
Query: 445 ggaatcccagttacttcggagtaaagtcagtgattcagccagattctggaatattcttac 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 ggaatcccagttacttcggagtaaagtcagtgattcagccagattctggaatattcttac 692
Query: 505 taaaagacaaaaatatcattagaaagcttcatcacacaga 544
||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 taaaagacaaaaatatcattagaaagcttcatcacacaga 732
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space: 498756
Effective search space used: 498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no449_a24.g1 MSMg01no449_a24.g1 CHROMAT_FILE:
MSMg01no449_a24.g1 PHD_FILE: MSMg01no449_a24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:33 2005
(427 letters)
>mm_chr1_153752419_153753245
Length = 827
Score = 774 bits (400), Expect = 0.0
Identities = 421/428 (98%), Gaps = 1/428 (0%)
Strand = Plus / Minus
Query: 1 aatccaccgggcctagagggggatcacggttcaagagaaagcttcaaacctgagccagat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 aatccaccgggcctagagggggatcacggttcaagagaaagcttcaaacctgagccagat 698
Query: 61 tcaggaactggctccagctgtgtgactcaggctaatcacgtaaactctctgttcc-ttcg 119
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 697 ccaggaactggctccagctgtgtgactcaggctaatcacgtaaactctctgatcctttca 638
Query: 120 ttctcacaccaaggagatttgggtgatgctgctaacttgggaaattaaagaaaagatata 179
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 637 ttctcacaccaaggagatttgggtgatgctgctaacttgagaaattaaagaaaagatata 578
Query: 180 cacagagctctggctgtggcctagatgtctgtgttcagggggttttctgtgcatcaccga 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 cacagagctctggctgtggcctagatgtctgtgttcagggggttttctgtgcatcaccga 518
Query: 240 gtgtttgcgaggtctgtgagagaaaatggaaatgaagaattaactcagctcttacctaag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gtgtttgcgaggtctgtgagagaaaatggaaatgaagaattaactcagctcttacctaag 458
Query: 300 ccatagataagagatagaatattagaatgggacatctccagcagcctggctgtcttgctg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ccatagataagagatagaatattagaatgggacatctccagcagcctggctgtcttgctg 398
Query: 360 ttttgtggaataacctacacatttattcagtcggtcggtagcagggtacggctgaaacct 419
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 397 ttttgtggaataacctacacattgagtcagtcggtcggtagcagggtacggctgaaacct 338
Query: 420 catctaga 427
||||||||
Sbjct: 337 catctaga 330
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 827
Length adjustment: 9
Effective length of query: 418
Effective length of database: 818
Effective search space: 341924
Effective search space used: 341924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
