Query= MSMg01no449_b18.b1 MSMg01no449_b18.b1 CHROMAT_FILE:
MSMg01no449_b18.b1 PHD_FILE: MSMg01no449_b18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:37 2005
(578 letters)
>mm_chr1_61410727_61411705
Length = 979
Score = 1073 bits (555), Expect = 0.0
Identities = 570/575 (99%), Gaps = 1/575 (0%)
Strand = Plus / Plus
Query: 5 gaattcatttgttttccttcaatcatcttactccaaatacagtgtcaggtgccaacttta 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatttgttttccttcaatcatcttactccaaatacagtgtcaggtgccaacttta 264
Query: 65 tgccttctcaggcaccgcaccactgttcccattctctggtcaaaggtctccagacccact 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgccttctcaggcaccgcaccactgttcccattctctggtcaaaggtctccagacccact 324
Query: 125 gtgtgccttgccaaaccttgctgctgtaacaagcataacctgctatccttgatggacccc 184
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 325 gtgtgccttgccaaaccttgctgctgtagcaagcataacctgctatccttgatggacccc 384
Query: 185 -cccgctggagtttaacttcaaggtggcattcagggatggtccagtaatgcctgtaggca 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcccgctggagtttaacttcaaggtggcattcagggatggtccagtaatgcctgtaggca 444
Query: 244 tttcacaaggagttcagtaagaacataaaggacttcaaagttatcgcacagtttttgttc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttcacaaggagttcagtaagaacataaaggacttcaaagttatcgcacagtttttgttc 504
Query: 304 ttttatttacagcggtttgacttcttgttcttgatcacaatgtgcatcttatcgtactga 363
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 505 ttttatttacagcggtttgacttcttgttcttgatcacaatgtgcatcttatagtactga 564
Query: 364 ataggtggctagatgtgaaatacaagatgaaagtcatggaactgtatacagcctgtgtct 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ataggtggctagatgtgaaatacaagatgaaagtcatggaactgtatacagcctgtgtct 624
Query: 424 ttcttatggtttctattgctgtgaagagacactgtgaccacagcaactcttagataaagg 483
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttcttagggtttctattgctgtgaagagacactgtgaccacagcaactcttagataaagg 684
Query: 484 aaggcatttaattgaggctggcttacagttcagaggtttagtccgttagtgtcatggtgg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aaggcatttaattgaggctggcttacagttcagaggtttagtccgttagtgtcatggtgg 744
Query: 544 gaagcacagcagcaggcaggcagatgtggtgctaa 578
|||||||||||||||||||||||| ||||||||||
Sbjct: 745 gaagcacagcagcaggcaggcagacgtggtgctaa 779
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 979
Length adjustment: 10
Effective length of query: 568
Effective length of database: 969
Effective search space: 550392
Effective search space used: 550392
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no449_b18.g1 MSMg01no449_b18.g1 CHROMAT_FILE:
MSMg01no449_b18.g1 PHD_FILE: MSMg01no449_b18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:37 2005
(558 letters)
>mm_chr1_61582786_61583740
Length = 955
Score = 1019 bits (527), Expect = 0.0
Identities = 549/563 (97%), Gaps = 13/563 (2%)
Strand = Plus / Minus
Query: 1 ttttaaaatcataaagttatcaccttatttctatacacaaattgaattattttgtctgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 ttttaaaatcataaagttatcaccttatttctatacacaaattgaattattttgtctgca 696
Query: 61 gcaacagtaacatcaacagataattgtagttgtttcatttttagttattgcacatgttat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 gcaacagtaacatcaacagataattgtagttgtttcatttttagttattgcacatgttat 636
Query: 121 tcattgttttagaactaaatattagatattgccaaataataacaaaaatcacttaaggac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 tcattgttttagaactaaatattagatattgccaaataataacaaaaatcacttaaggac 576
Query: 181 tcatattcataatcacctaaatattacaggcaaagcattggttataataagtgtctatta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 tcatattcataatcacctaaatattacaggcaaagcattggttataataagtgtctatta 516
Query: 241 ttttt-----gattttttatgtgatcactgcaaacatgaaaaattgtaagacttagacag 295
||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tttttgaaggga-----tatgtgatcactgcaaacatgaaaaattgtaagacttagacag 461
Query: 296 gctttatagttctgtttgctgtaactcaagaaatacgtatgatgactcaaggaaaaagaa 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 gctttatagttctgtttgctgtaactcaagaaatacgtatgatgactcaaggaaaaagaa 401
Query: 356 ggggaaggaagaatattgtttgcagtctctggatcgcaacagaacccactagcttgttaa 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ggggaaggaagaatattgtttgcagtctctggatcgcaacagaacccactagcttgttaa 341
Query: 416 cttggccagcatcttgccttttctgaattgtccattcctgattatatgcctcacctctac 475
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 cctggc---catcttgccttttctgaattgtccattcctgattatatgcctcacctctac 284
Query: 476 ccttcctcatatagtcatcacatgatcttcattgaccaatcaagtgttttcctccctagt 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 ccttcctcatatagtcatcacatgatcttcattgaccaatcaagtgttttcctccctagt 224
Query: 536 tactacttggggatgaactttgg 558
|||||||||||||||||||||||
Sbjct: 223 tactacttggggatgaactttgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 955
Length adjustment: 10
Effective length of query: 548
Effective length of database: 945
Effective search space: 517860
Effective search space used: 517860
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
