NNNNNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCATGTGAGATTTCCATAAGTCAAAGATATCAAAAGAT
TATCCAAAGAAATAAAAATTGAAAAAATTAAGATCAAATGTCATACAATA
GGTTACATTCAACCAAGTCTATGGAAATCATACTATAATCTAGCTCTCAG
AGATAAAAAGTAAATTAATTATTCCAAAAGGAATGAAAGAAAACAAATAA
CATACAAGATCACAGATTTAAGTATTAATCCACTTCTCAGCAGAAAACTT
AAACTCTATGACAATGTATTTAAATTTTGTGTATTTATTTTTTGAGATTA
AAGCATGTTTTCATCATTTCCCTGTTCCTTTCCTCTCTCCACACCCTCCC
ATATACTACTTCTCTCTCCCATTCAAATTAAGGATCTTTTTTCTCATTAC
TTGATGCTACTTAAAAATTTCTAAATTCTTTTGTAGTACTGATAGAAAAT
AATGTAGATTACTTTTGATTGTTTAGAAGAATATGAAATCTGTCCTAAGA
GAAACTTTAAAGTAATTTATTCCCTTCCCGTCCGGCCAGCACCAGGGTAG
CTAGGGCACAGAGTCAGCTGACACCTGCCAGCAACCCACAAGAACCGCCA
ACAGATCTTAAGACCTCTGGTGAGTGGACACAGAGTCTGCTCAAATCCAT
TTGTGCGGGACCTGAGACTGCTTTAGTTAGGAAGCCGAAAACCCAGC

NNNTTTTCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCATAGCGACACACTA
TTGGCTTATTCAAACATCAGCAGAAAATTACATGTACTTGCAGGGTGTCA
GAGTTCTATGAGTTGTCGACTCAGTTTAGATAGCCCTGTTATGTCCTCAC
ATTCCTCTTTATCTTTAAGGTTAAGCTGTTCCCAGGAATGTTTTAACTAT
AGGGCATACCCGGGTTTGTTTTTCTTTTTTTCTCAGCCCCAGGCAGCCTC
TAGGCTCACAAACAACCAGCAATTTCTGAGTACTTTATATGACTTACAGG
TCTTGAAATTTCATCTTTCTTTCACAGCCAGGACTATACAGAGAAACCCT
GTCCCAAAAAATAAAACAAAACAACAACAACAAAATGTTCAACATCCTTA
ATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCATACC
AGTCAGAATGGTAAGATAAAAAACTCAGGTGACAGCAGATGCTGGTGAAG
ATGTGGAGAAAGAAACTCCTCCATTGCTGGTGGGATTGCCAGCTGGTACA
CCACCCTGGAGTCAGTTTGTTGTTTCTTCAAAAACCTGAATATTTCTACT
GGAGAAACAGCTATATCACTCCTGGGGCTTACCCCAAAAAATTCCCCCAT
GTATAAAGAAACCGGCCCCCTATGTTTTATAAACCTAATTTTAAAAACAA
G

Query= MSMg01no449_h22.b1 MSMg01no449_h22.b1 CHROMAT_FILE:
MSMg01no449_h22.b1 PHD_FILE: MSMg01no449_h22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:08 2005
         (568 letters)



>mm_chr1_99391400_99392367
          Length = 968

 Score =  961 bits (497), Expect = 0.0
 Identities = 544/577 (94%), Gaps = 27/577 (4%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcatgtgagatttccataagtcaaagatatcaaaagattatccaaagaaataaaa 63
           |||||||||||||||  || |||||||||||||||||||||||| |||||||||||||||
Sbjct: 577 ggaattcatgtgagacatcaataagtcaaagatatcaaaagattctccaaagaaataaaa 518

                                                                       
Query: 64  attgaaaaaat---------------------------taagatcaaatgtcatacaata 96
           |||||||||||                           ||||||||||||||||||||||
Sbjct: 517 attgaaaaaattaaaattatataactattcagacataataagatcaaatgtcatacaata 458

                                                                       
Query: 97  ggttacattcaaccaagtctatggaaatcatactataatctagctctcagagataaaaag 156
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 457 ggttacattcaaccaagtctatggaaatcatactataatctagctctcagagataaaagg 398

                                                                       
Query: 157 taaattaattattccaaaaggaatgaaagaaaacaaataacatacaagatcacagattta 216
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 taaattaattattccaaaaggaatgaaagaaaacaaataacatacaagatcacagattta 338

                                                                       
Query: 217 agtattaatccacttctcagcagaaaacttaaactctatgacaatgtatttaaattttgt 276
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 agtattaatccacttctcagcagaaaacttaaactctatgacaatgtatttaaattttgt 278

                                                                       
Query: 277 gtatttattttttgagattaaagcatgttttcatcatttccctgttcctttcctctctcc 336
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gtatttattttttgagattaaagcatgttttcatcatttccctgttcctttcctctctcc 218

                                                                       
Query: 337 acaccctcccatatactacttctctctcccattcaaattaaggatcttttttctcattac 396
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 acaccctcccatatactacttctctctcccattcaaattaaggatcttttttctcattac 158

                                                                       
Query: 397 ttgatgctacttaaaaatttctaaattcttttgtagtactgatagaaaataatgtagatt 456
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 ttgatgctacttaaaaatttctaaattcttttgtagtactgatagaaaataatgtagatt 98

                                                                       
Query: 457 acttttgattgtttagaagaatatgaaatctgtcctaagagaaactttaaagtaatttat 516
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 97  acttttgattgtttagaagaatatgaaatctgtcctaaaagaaactttaaagtaatttat 38

                                                
Query: 517 tcccttcccgtccggccagcaccagggtagctagggc 553
           |||||||||||||||||||||||||||||||||||||
Sbjct: 37  tcccttcccgtccggccagcaccagggtagctagggc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space:   534564
Effective search space used:   534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)