BAC Information

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BAC

Clone NameMSMg01-449I20
Chromosome1 (Build37)
Map Location 87,452,038 - 87,452,304
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040213, LOC100039794, EG665338
Downstream geneSp110, Sp140, Sp100, A630001G21Rik, Cab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-449I20.T7 (MSMg01no449_i20.b1)MSMg01-449I20.TJ (MSMg01no449_i20.g1)
ACCAG537496AG537497
length746760
length of high quality
(start - end)
607 (74 - 680)270 (336 - 605)
definitionCHROMAT_FILE: MSMg01no449_i20.b1 PHD_FILE: MSMg01no449_i20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:12 2005CHROMAT_FILE: MSMg01no449_i20.g1 PHD_FILE: MSMg01no449_i20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:12 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNAACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATGC
GCGGAATTCAGATATCTTTCCTGCTATAAGTAAAGACAATAAGCTAGCTG
GGTGGGATCCCCACCACTCCTGGGCTTCAACTAGCTCTGTCCCAGGCTAA
CCTTGAATTCAGGAATCTGCCTGAGTAGTCCAAACAATAAACTTAGCTGG
TGGGATCTTGCCATGAAATCACCACTCTCTAAATCTTGTTATTTCCTTCC
TTAATATCTTTCTGACAAGGTGGCTCACACTGCAGCAGCCTCTGTTTTTT
AGGTCCATGAAGCCCCCTTCATGTAATTCTTATTGCATCCTTATATTTTG
CATAGTTGAGAATATATTGAACTCATGTTGCCAAACTCATTCTATGAGAC
AGTTTTATTCATATCCTTCACCTGTTTGATTATATTTTCTTGTATTTCTT
TATGTTTATTTGCTTCCTCTTTTAATGCTTTTGCTTGCTTGAATGTATTT
TCATGTATTTCCTTAAGGAATTTATTCATGTCTTCTTTAAAGGCTTTTAT
TAGCTTCATTAGATTGAATTTAAAATCCTCTTTTTGTGCTTCAGTTTCAT
TAGGATATCCAGGGTTTGTTGTAGAAGGATAGCTGCGCACAACTCACCTC
TGTAGGCTGTCCCAGATGGATCAATTGGGATAGTGGGCAACTCTTACTGG
AATGGGATTGGTTGGGCAGGGTTCCAAGATCATTAGTTTTGGGGGC
NNAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXGTTCAAAAGCGGAG
GTGACACTATAGAAGGTTTCGAAAAAATCTTTGTTCAGCTCTGAGCCCCA
TTTTTTTTTTGTTTTCATTTTCATTTATTCTGTGCAGTTTAAAGAGGCAG
TTAAAACATACAAACCATGGAAGCTTTAGATATTCTAAGACAGGAACACC
ATTCATTTGCATCTCTCTCATCTGTATTTTACATCTTGTCATACACAGGT
GCTATTAATTTTTCAGTTCCAATTCCTCACAAAGGACCTGTCAAGCAGCA
AGATGATCATGCATCCCAGCACAGTGTCATAATGTCTCCTGTAAGAAACC
ACAGCAGCAGTATCTGGTGAATGGTTATGCATAGAACTGGCTTGGAGCTT
AATGCTAGAAAGTCCTCAACAGGCAGCATGTGTGCTAACAAATGGAAATG
CAGATTCTACTGATACAAGATAAAATGGAACTTGTTAGAAGTTATAAACT
CTGGGACACTTTAACAGAAGACAATACAAGGTTCCTTAATTCTATATTCT
ATAACCCAGTGCCATTCTACAGTCACCTGAGCATATCTCCATGCTCTGAG
GAATGCTTATTGGCTTTCTGAAGTCAACTTCCAATATTAAAGCACCTTAG
TTTACCAGCTGAAATCTGTTTTTATTTTGTGCTACCAGTCACAAGTAAAA
ATCTTCTTGAAAAAAATTGACGGTAAAAAAAGAATGGTCTGTGGGAATCT
GAGCCCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no449_i20.g1 MSMg01no449_i20.g1 CHROMAT_FILE:
MSMg01no449_i20.g1 PHD_FILE: MSMg01no449_i20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:12 2005
         (270 letters)



>mm_chr1_87451838_87452507
          Length = 670

 Score =  433 bits (224), Expect = e-126
 Identities = 257/268 (95%), Gaps = 2/268 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcctgtaagaaaccacagcagcagtatctggtgaatggttatgcatagaactggcttgg 60
           |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 201 ctcctgtaagaaaccacagcagcagtatctggcgaatggttatgcatagaactggcgtgg 260

                                                                       
Query: 61  agcttaatgctagaaagtcctcaacaggcagcatgtgtgctaacaaatggaaatgcagat 120
           ||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||| |
Sbjct: 261 agcttaatgctaggaagtcctcaacaggtagcatgtgtgctaacaaatggagatgcagct 320

                                                                       
Query: 121 tctactgatacaagataaaatggaacttgttagaagttat-aaactctgggacactttaa 179
           |||||||||||| |||||||||||||||||||| |||| | |||||||||||||||||||
Sbjct: 321 tctactgatacaggataaaatggaacttgttaggagtt-tcaaactctgggacactttaa 379

                                                                       
Query: 180 cagaagacaatacaaggttccttaattctatattctataacccagtgccattctacagtc 239
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 380 cagaagacaatacaaggttccttaattctatattctataacccagtgtcattctacagtc 439

                                       
Query: 240 acctgagcatatctccatgctctgagga 267
           ||||||||||||||||||||||||||||
Sbjct: 440 acctgagcatatctccatgctctgagga 467


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 670
Length adjustment: 9
Effective length of query: 261
Effective length of database: 661
Effective search space:   172521
Effective search space used:   172521
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)