BAC Information

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BAC

Clone NameMSMg01-449K20
Chromosome1 (Build37)
Map Location 173,953,258 - 173,953,535
singlet/doubletsinglet
Overlap geneVangl2
Upstream geneFcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6
Downstream geneLOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-449K20.T7 (MSMg01no449_k20.b1)MSMg01-449K20.TJ (MSMg01no449_k20.g1)
ACCAG537591AG537592
length747779
length of high quality
(start - end)		587 (51 - 637)286 (81 - 366)
definitionCHROMAT_FILE: MSMg01no449_k20.b1 PHD_FILE: MSMg01no449_k20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:21 2005CHROMAT_FILE: MSMg01no449_k20.g1 PHD_FILE: MSMg01no449_k20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCACTGGTCTTACCCATTCCCCATCATCCTGAAGCAGCTGGT
CTGATAGAAAGATGGAATGGCCTTTTGAAGACGCAGTTACAGCGCCAATT
AGGTGGTAACAGCTTGGAAGGCTGGGGCAGAGTTCTTCAGAAGGCAGTAT
ATGCTTTGAATCAGCGCTCGATATATGGTACAGTTTCACCCATAGCCAGG
ATTCATGGGTCCAGGAATCAAGGGGTAGAAAAGGGAATAGTTCCACTTAC
TATCACTCCTAGTGACCCTCTAGGAAAATTTTTGCTTCCTGTCCCCATAA
CTCTAGGTTCTGCTGGCTTAGAAGTTTTGGCTCCTGAGAGGGGAGTGCTC
CTACCAGGAGCTACAACAAACATTCCATTGAACTGGAAGCTCAGACTTCC
CCCTGGTCATTTTGGGCTTCTAATGCCCTTAAACCAACAGGCTAAAAAAG
GAATAACAGTGTTATGAGGGGTGATAGATCCATATTACCATGGGGAAATT
GGATTACCTCTTCACAATGGTGGTAAGCAAGATTATGTCTAGAGTGTAGG
AGATCCCTTAGGGCGTCTCTTAGTACTACCATGTCCTGTGATCAAAGTCA
ATAGGAAACTACAACAGCCTAATCCAAGCACGATGACCAAGGACGCAGAC
CCCTTAGGAATGAAGGTATGGGTCAATCCTCCAGGAAAAGATGCAAG

NGGGCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCCAGAAATTCAGTGCACAAACAGTATGATC
CAACCATCTCTGTCCAGCTGTGGAACATGCTCACTAGCTCTGAAAGAACT
GCGGACATACATACAGTTGATCCCGTGCCCTCTTGTTTAGTCTTTGACTA
CCCCCAAACTACCTTCTGTCTCTGTGGAGTTGCCTGTTCTGGCTTTTTTC
TCTAAATTTCATCATTTTATGTCTGGCATCCTCTTCTCAGAATGTTTGCA
AGGCTCACTCATATGTATGTATGTATGTATTTATGTATGTATGTATGNAC
ATCATANTATATGTAATGTTTTTTATGNCTTANTAATATTCTACTACACA
TAATATTCCTTACCTTATCCCACCCCCTTATTTACTTATTTATTTGTTCA
TTTACCCACTAATTTTTCACCCAATTTCTACTTATCTTTTCCATCTTATT
CTTACTTTTATATCTTCTTATACATTACTTTTCTTTCCTACTTTTATACA
CCCACACCTCCTATCTTACTTCTTCTTATCTTATTTCCATTTTTCTTATT
ATTATTACACTTCTCTCTTTTATAATTACTCCTTTATCTATTTCATCCCT
TCTCTTTACTTTACCACTAACATTCTTCTTTTTTTTCTATCAACCAAATA
TAAATCCACATATTCTTTTATCTTTTTTTCACCTATATTCTTCATATATA
CTCACATCCCTTTATATTTCCCACATTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no449_k20.g1 MSMg01no449_k20.g1 CHROMAT_FILE:
MSMg01no449_k20.g1 PHD_FILE: MSMg01no449_k20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:22 2005
         (286 letters)



>mm_chr1_173953105_173953790
          Length = 686

 Score =  509 bits (263), Expect = e-148
 Identities = 277/286 (96%), Gaps = 8/286 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgcacaaacagtatgatccaaccatctctgtccagctgtggaacatgctcactagctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 agtgcacaaacagtatgatccaaccatctctgtccagctgtggaacatgctcactagctc 372

                                                                       
Query: 61  tgaaagaactgcggacatacatacagttgatcccgtgccctcttgtttagtctttgacta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tgaaagaactgcggacatacatacagttgatcccgtgccctcttgtttagtctttgacta 312

                                                                       
Query: 121 cccccaaactaccttctgtctctgtggagttgcctgttctggcttttttctctaaatttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 cccccaaactaccttctgtctctgtggagttgcctgttctggcttttttctctaaatttc 252

                                                                       
Query: 181 atcattttatgtctggcatcctcttctcagaatgtttgcaaggctcactcatatgtatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 atcattttatgtctggcatcctcttctcagaatgtttgcaaggctcactcatatgtatgt 192

                                                         
Query: 241 atgtatgtatttatgtatgtatgtatgnacatcatantatatgtaa 286
           ||||||||||    |||||||||||    ||||||| |||||||||
Sbjct: 191 atgtatgtat----gtatgtatgta----catcatagtatatgtaa 154


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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