BAC Information

Click to search

BAC

Clone NameMSMg01-449M18
Chromosome1 (Build37)
Map Location 172,698,189 - 172,861,816
singlet/doubletdoublet
Overlap geneAtf6, Dusp12, Fcrlb, Fcrla, LOC100040778
Upstream geneLOC100039960, 1700084C01Rik, Hsd17b7, Ddr2, LOC100040571, Uap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik, Nos1ap, LOC100040002, LOC640532, Olfml2b
Downstream geneFcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-449M18.T7 (MSMg01no449_m18.b1)MSMg01-449M18.TJ (MSMg01no449_m18.g1)
ACCAG537681AG537682
length784806
length of high quality
(start - end)		412 (78 - 489)248 (81 - 328)
definitionCHROMAT_FILE: MSMg01no449_m18.b1 PHD_FILE: MSMg01no449_m18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:30 2005CHROMAT_FILE: MSMg01no449_m18.g1 PHD_FILE: MSMg01no449_m18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(172,698,189 - 172,698,600)(172,861,571 - 172,861,816)
sequence
NNNNNTTCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCACCTTATTCTCCCGAGAATCTATCCTCTTCTCTTGTCCAA
GTCAAACACTCAAGGTGAAGGATAACCAAGCAAATGGCAGAAGTTGGGCA
CTTTGTAAACAAACACTGCTACAGTCAGAAACACAAAGGGGTTCAAAGTC
AGAGCACTTACTGCAGAATGCACACGGTTGAATAGCTTACGACTGAAAGA
AACAGATAGGAGCGGTGGCCATATCACCTAAGAGCAGGGCCTGTAAACCT
CAGATGCTGTGGATTGGGAAAATGCTGGTTTATTATCAGTGCGATGGCTC
AGCAGGAAGAGCTGCCTCTCACTACGCCTGACAACCTCAATTCCTTTTCC
CGGACCCACTGCTCACATTCCCACGCCCAAGAATAAAATATAAAAATAAA
AAATGTAACTTAAAAAATTTTAAAGAAAAATATTGGTTAACAAAGTCTCA
GCTTGAGATTCCTTTTTACCCCACCAGAATGACCAAGGTAATTCAAGCGA
CAGCACATGCTGGCAAGATGCGGAGCAAGGGAAAACCCTCTACCTTGCTG
GTGGGAGTGCAAACTTGTACAACCCCTTTGGAAACAAATCTGGCGGTTCT
CCGAGAAATGGGAAAATTCCAACCCCAGAACCACCTATACCCTCCTTGGG
ATAAACCCAAAGGAGGCCCCCCCCCCCCCAGGACACTTTTTCAATATGTT
CAATAGGGGTATTTTTTTAAACCCCAACCAAACG

GGTTGGCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAGTCAGCTTGGGCTAGAT
ATGAGTCCTAGGCCAGTGTGATCTACAGTTAAGGGTTATGAAGTGAGGGG
TACTGGTGGGTCCATGACAAGGTGTGCCCCTGAGTAACTACAGCATGTGA
TAGATCTGATATAAAAGGGACTTATTAGGGAGTGGAGAGGAGTGGGGACC
TGGAGAAGTAGTATAGCCAGACAGAAAAAGGGAGAGAGACCACCAGGAAA
ACACACACACACACACACACACACACTTTTTTTTTTTGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGATAGATAGAGATGATACNTGCGTGGGTTCTGG
GCTGGGACAAAGTTCACTTCTGCCCCCCCCTGGGACACTGGGAGGCAGCC
AAAGGCCCCCGAAACGAAAGGCCCCTGAGATGTACCCAGAATTAATCTCC
TGTTTGTGATTTATTTCTCTTCTTGTTCTTCTTCTATTTTATCTATATCG
GTATCTTTCTCTTTGTTCACTTTCTTCCTCTTCTATTTACCTACCACTTT
TGTTCTTTATACTATCTTTCTTTAGACGTTCTAATTTTCTTCCTTTTCTT
TTTTCCTCATCTCCCTCTATCCCTCATCTACCTTTTCTTTTTTTATCTTG
TTTTTTTTAAACTGCTCAGACCAATATTTTGTATCATGACTTATTACTCA
TCCTCACCATACTCCCTTCACTTCCTCCCTCTACCTTATTTTTTTTCTCC
GTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no449_m18.b1 MSMg01no449_m18.b1 CHROMAT_FILE:
MSMg01no449_m18.b1 PHD_FILE: MSMg01no449_m18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:30 2005
         (412 letters)



>mm_chr1_172697989_172698800
          Length = 812

 Score =  758 bits (392), Expect = 0.0
 Identities = 407/412 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atctatcctcttctcttgtccaagtcaaacactcaaggtgaaggataaccaagcaaatgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atctatcctcttctcttgtccaagtcaaacactcaaggtgaaggataaccaagcaaatgg 260

                                                                       
Query: 61  cagaagttgggcactttgtaaacaaacactgctacagtcagaaacacaaaggggttcaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagaagttgggcactttgtaaacaaacactgctacagtcagaaacacaaaggggttcaaa 320

                                                                       
Query: 121 gtcagagcacttactgcagaatgcacacggttgaatagcttacgactgaaagaaacagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcagagcacttactgcagaatgcacacggttgaatagcttacgactgaaagaaacagat 380

                                                                       
Query: 181 aggagcggtggccatatcacctaagagcagggcctgtaaacctcagatgctgtggattgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggagcggtggccatatcacctaagagcagggcctgtaaacctcagatgctgtggattgg 440

                                                                       
Query: 241 gaaaatgctggtttattatcagtgcgatggctcagcaggaagagctgcctctcactacgc 300
           |||||||||||   |  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaaatgctgggcgaggatcagtgcgatggctcagcaggaagagctgcctctcactacgc 500

                                                                       
Query: 301 ctgacaacctcaattccttttcccggacccactgctcacattcccacgcccaagaataaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgacaacctcaattccttttcccggacccactgctcacattcccacgcccaagaataaa 560

                                                               
Query: 361 atataaaaataaaaaatgtaacttaaaaaattttaaagaaaaatattggtta 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atataaaaataaaaaatgtaacttaaaaaattttaaagaaaaatattggtta 612


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space:   323609
Effective search space used:   323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no449_m18.g1 MSMg01no449_m18.g1 CHROMAT_FILE:
MSMg01no449_m18.g1 PHD_FILE: MSMg01no449_m18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:31 2005
         (248 letters)



>mm_chr1_172861397_172862044
          Length = 648

 Score =  468 bits (242), Expect = e-136
 Identities = 245/246 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagtcagcttgggctagatatgagtcctaggccagtgtgatctacagttaagggttatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 aaagtcagcttgggctagatatgagtcctaggccagtgtgatctacagttaagggttatg 361

                                                                       
Query: 61  aagtgaggggtactggtgggtccatgacaaggtgtgcccctgagtaactacagcatgtga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 aagtgaggggtactggtgggtccatgacaaggtgtgcccctgagtaactacagcatgtga 301

                                                                       
Query: 121 tagatctgatataaaagggacttattagggagtggagaggagtggggacctggagaagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tagatctgatataaaagggacttattagggagtggagaggagtggggacctggagaagta 241

                                                                       
Query: 181 gtatagccagacagaaaaagggagagagaccaccaggaaaacacacacacacacacacac 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gtagagccagacagaaaaagggagagagaccaccaggaaaacacacacacacacacacac 181

                 
Query: 241 acacac 246
           ||||||
Sbjct: 180 acacac 175


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |