Query= MSMg01no449_m21.b1 MSMg01no449_m21.b1 CHROMAT_FILE:
MSMg01no449_m21.b1 PHD_FILE: MSMg01no449_m21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:31 2005
(568 letters)
>mm_chr1_170327204_170328171
Length = 968
Score = 1062 bits (549), Expect = 0.0
Identities = 561/565 (99%), Gaps = 1/565 (0%)
Strand = Plus / Plus
Query: 4 gaattcaagaggggtataccagacaccatggcctcttttcaagaaagcaacattcagagg 63
|||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaagaggggaa-agcagacaccatggcctcttttcaagaaagcaacattcagagg 263
Query: 64 cctagggatttagttggctggtagactctaggcatacataagatctgggctcagtcccca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cctagggatttagttggctggtagactctaggcatacataagatctgggctcagtcccca 323
Query: 124 gcacttcagaaacacagcacagagtatgcacctatgtcactcaggagatggaggcaggag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gcacttcagaaacacagcacagagtatgcacctatgtcactcaggagatggaggcaggag 383
Query: 184 gatcagaaggccaagttattttaggctatataaagagtttgaggccaacttgagccacat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gatcagaaggccaagttattttaggctatataaagagtttgaggccaacttgagccacat 443
Query: 244 gagaccctttctccaaaatggaaggaaggaagggagaaatgaatgaaggaagaaaaatgg 303
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 444 gagaccctttctccaaaatggaaggaaggaagggagaaatgaaggaaggaagaaaaatgg 503
Query: 304 aaatggcaccagagtcattacaggtggaggaaacaacaagagtgcacagaccctctgagg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aaatggcaccagagtcattacaggtggaggaaacaacaagagtgcacagaccctctgagg 563
Query: 364 gccagtggaagattaggcaaattcttattctttggttataatcaggaagtgtggtagaaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gccagtggaagattaggcaaattcttattctttggttataatcaggaagtgtggtagaaa 623
Query: 424 attatctctgggacttgaaagatagttcagcggttaaaagcactcatagttgtttttcct 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 attatctctgggacttgaaagatagttcagcggttaaaagcactcatagttgtttttcct 683
Query: 484 gggattgggagttcaatttccagcacacaaggcagctcacaactttctgcaatccaacgc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gggattgggagttcaatttccagcacacaaggcagctcacaactttctgcaatccaacgc 743
Query: 544 taagtgatttgatacccttacatag 568
|||||||||||||||||||||||||
Sbjct: 744 taagtgatttgatacccttacatag 768
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space: 534564
Effective search space used: 534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no449_m21.g1 MSMg01no449_m21.g1 CHROMAT_FILE:
MSMg01no449_m21.g1 PHD_FILE: MSMg01no449_m21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:31 2005
(412 letters)
>mm_chr1_170494017_170494828
Length = 812
Score = 791 bits (409), Expect = 0.0
Identities = 411/412 (99%)
Strand = Plus / Minus
Query: 1 attctcccatgttttatttatttatttttttagctctaaaaaaaaattcccaatcatgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 attctcccatgttttatttatttatttttttagctctaaaaaaaaattcccaatcatgct 683
Query: 61 gattatttcaaagacccgtgttggttccattgatttttttctattccatttatttcttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gattatttcaaagacccgtgttggttccattgatttttttctattccatttatttcttct 623
Query: 121 ctagtctttaagtcccccatggtttcttcattgacccaatggttgtttcttagtttgtta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ctagtctttaagtcccccatggtttcttcattgacccaatggttgtttcttagtttgtta 563
Query: 181 gaaatgtctcactatcacttcattgatcacactcaaacattcttctgtgactgaagaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gaaatgtctcactatcacttcattgatcacactcaaacattcttctgtgactgaagaaaa 503
Query: 241 tgttgctcaaggtagtttctgctcaaatctactgaactaattcattgctagagacttgat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tgttgctcaaggtagtttctgctcaaatctactgaactaattcattgctagagacttgat 443
Query: 301 ttgttctgtaaaatagtccataaatacttgagaaaatgtgtaagtagaccatggtataca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ttgttctgtaaaatagtccataaatacttgagaaaatgtgtaagtagaccatggtataca 383
Query: 361 agccattaggtatagttggngaattatctttatttatcttctaatatccatc 412
||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 382 agccattaggtatagttggtgaattatctttatttatcttctaatatccatc 331
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space: 323609
Effective search space used: 323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
