BAC Information

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BAC

Clone NameMSMg01-449O12
Chromosome1 (Build37)
Map Location 171,567,259 - 171,567,762
singlet/doubletsinglet
Overlap genenone
Upstream geneEG383613, Nuf2
Downstream geneRgs5, Rgs4, LOC100039960, 1700084C01Rik, Hsd17b7, Ddr2, LOC100040571, Uap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik, Nos1ap, LOC100040002, LOC640532
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-449O12.T7 (MSMg01no449_o12.b1)MSMg01-449O12.TJ (MSMg01no449_o12.g1)
ACCAG537764AG537765
length734754
length of high quality
(start - end)
504 (75 - 578)193 (344 - 536)
definitionCHROMAT_FILE: MSMg01no449_o12.b1 PHD_FILE: MSMg01no449_o12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:39 2005CHROMAT_FILE: MSMg01no449_o12.g1 PHD_FILE: MSMg01no449_o12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCC
GCGGAATTCCAGGACTTCCCATTACATATCCTAGACCAGAAGTTGGATGC
TGCAGGTCACTTCCCGCCTCCTGGAGATACAACAAGGACTCCCACTCCAT
CTCTAAAGGGAACAGACAGGAGTCAGAGTTCTGTGAGAGCCGCTCCACTC
ACATAATTACCCTAATGCAGCATTTATCCTCGAGGTCAGCCCTGGCTGTC
AAAAAGCCAGTCCCTCTCCCTGGAGAACAGTATCGTTCCCTGACAAACAG
TTCCTGCCGCAAGAACATTCTGTTTTTTTGCGTTCTCGCCACACGGTATT
ATCCAACATAGCATTCGAGGACATTTCTAAAACTGTCTTTCTTGATTTTT
CTAAGCCACAGTGTCTTGGACCCGACTCCTACAAAATAGTGAGGATTTTT
GCTTTAAACCTTTCTACCTTTAGTCTCCCCGTTCTCGATATTTTATAAGG
TTTTTATTCCATCCCTGTGAATGAGAACTTTGGATACTCAGTCCCCGAGT
TCCCTTCCGTTTCCTTCGAATCTGGGTCATCACAGAGTTCTGCGTCCCCA
TTCCTCAGGTTTTGCCTGAGAGGATACAGGAACTGGTTTACTTCTTCTTG
CCTTTATCACCCAGTTTCTGCTACTGAAATTGCGAGCATTGGCACCAGGC
TGTGGTCCTGGGCTGGATATCCACCTTTCGGAAA
TTTTTTACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAACTG
GGAGGTNGAACTATAGAAGTACCAGAAAAATTCTCACCTGAGGAATACCG
AATGGCAGAGAAGCACCTGAAAAAATGTTCACCATCCTTAATCATCAGGG
AAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATG
GCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGA
AAGAGGAACTTTTCTCCATTGTTGGTTTGATTGCAGGCTTGTACAACCAC
TCTGGAAATCCGTCTGGCGGTTCCTCTGATAANTTGACATAGNACTACCG
GAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAAC
TGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAA
TAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATA
CAGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTTAAAA
GAATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCA
TCCTGAGTGAGGTAACACATTCCCCAGGAACCTCACACAATATGAACTCA
CTGAAAAAGGGGATATTTTTTTTTTTTCCAAGAAAACCCCACAAATAAGA
AAACATTTCCTAAACCCTTGAAACCTCAATAAAAATGGAGAATTGAGGGG
GTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no449_o12.b1 MSMg01no449_o12.b1 CHROMAT_FILE:
MSMg01no449_o12.b1 PHD_FILE: MSMg01no449_o12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:39 2005
         (504 letters)



>mm_chr1_171567059_171567962
          Length = 904

 Score =  936 bits (484), Expect = 0.0
 Identities = 499/504 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catatcctagaccagaagttggatgctgcaggtcacttcccgcctcctggagatacaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 catatcctagaccagaagttggatgctgcaggtcacttcccgcctcctggagatacaaca 645

                                                                       
Query: 61  aggactcccactccatctctaaagggaacagacaggagtcagagttctgtgagagccgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 aggactcccactccatctctaaagggaacagacaggagtcagagttctgtgagagccgct 585

                                                                       
Query: 121 ccactcacataattaccctaatgcagcatttatcctcgaggtcagccctggctgtcaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 ccactcacataattaccctaatgcagcatttatcctcgaggtcagccctggctgtcaaaa 525

                                                                       
Query: 181 agccagtccctctccctggagaacagtatcgttccctgacaaacagttcctgccgcaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 agccagtccctctccctggagaacagtatcgttccctgacaaacagttcctgccgcaaga 465

                                                                       
Query: 241 acattctgtttttttgcgttctcgccacacggtattatccaacatagcattcgaggacat 300
           |||||||||   |  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 acattctgtcagtccgcgttctcgccacacggtattatccaacatagcattcgaggacat 405

                                                                       
Query: 301 ttctaaaactgtctttcttgatttttctaagccacagtgtcttggacccgactcctacaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ttctaaaactgtctttcttgatttttctaagccacagtgtcttggacccgactcctacaa 345

                                                                       
Query: 361 aatagtgaggatttttgctttaaacctttctacctttagtctccccgttctcgatatttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 aatagtgaggatttttgctttaaacctttctacctttagtctccccgttctcgatatttt 285

                                                                       
Query: 421 ataaggtttttattccatccctgtgaatgagaactttggatactcagtccccgagttccc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ataaggtttttattccatccctgtgaatgagaactttggatactcagtccccgagttccc 225

                                   
Query: 481 ttccgtttccttcgaatctgggtc 504
           ||||||||||||||||||||||||
Sbjct: 224 ttccgtttccttcgaatctgggtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space:   441636
Effective search space used:   441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)