Query= MSMg01no450_f17.b1 MSMg01no450_f17.b1 CHROMAT_FILE:
MSMg01no450_f17.b1 PHD_FILE: MSMg01no450_f17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:15 2005
(498 letters)
>mm_chr1_88634415_88635312
Length = 898
Score = 932 bits (482), Expect = 0.0
Identities = 494/498 (99%)
Strand = Plus / Minus
Query: 1 tagcagacatagcttacagaagaaatttaataaatctaaacatataccagccaagattgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 tagcagacatagcttacagaagaaatttaataaatctaaacatataccagccaagattgt 639
Query: 61 ctaacccaaagaagaaaactgaagaaaaattaattcattccaaaactgaggcctgtaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 ctaacccaaagaagaaaactgaagaaaaattaattcattccaaaactgaggcctgtaaaa 579
Query: 121 gaaatttattccactgactttattttaaacttcatctccctttatcccctttgcaaccac 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 gaaattcattccactgactttattttaaacttcatctccctttatcccctttgcaaccac 519
Query: 181 aactgaacaagctataggaacatccatgtgtggccacaaagggtgaccttctcaaatcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 aactgaacaagctataggaacatccatgtgtggccacaaagggtgaccttctcaaatcca 459
Query: 241 gggagcacttataaactttctcccaggctcctgaggtattacaaaagccaaaccacatcc 300
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 gggagcacacagaaactttctcccaggctcctgaggtattacaaaagccaaaccacatcc 399
Query: 301 ctttagcttaactcaagccagcacacaccgctggggctgaatctccagagtcaggactct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 ctttagcttaactcaagccagcacacaccgctggggctgaatctccagagtcaggactct 339
Query: 361 cctctctcaagtcctcttggactgtggagtgttttcagtatagatagataccccacttgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 cctctctcaagtcctcttggactgtggagtgttttcagtatagatagataccccacttgt 279
Query: 421 tacttaggagaagttccattctattcccacagggtgaccatagaacaggaataaaacaga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 tacttaggagaagttccattctattcccacagggtgaccatagaacaggaataaaacaga 219
Query: 481 agcatccctacaatcctt 498
||||||||||||||||||
Sbjct: 218 agcatccctacaatcctt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space: 433344
Effective search space used: 433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no450_f17.g1 MSMg01no450_f17.g1 CHROMAT_FILE:
MSMg01no450_f17.g1 PHD_FILE: MSMg01no450_f17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:15 2005
(482 letters)
>mm_chr1_88468663_88469542
Length = 880
Score = 464 bits (240), Expect = e-135
Identities = 299/324 (92%), Gaps = 14/324 (4%)
Strand = Plus / Plus
Query: 162 tcctcctcctcttcctcttcctcttcctcttcctcttcctcctcctcctcctcctcctcc 221
||||||||||| |||| ||||| |||| ||||| || |||||||| ||||| |||||
Sbjct: 368 tcctcctcctc--cctcctcctc--cctcctcctc--ccccctcctccccctccccctcc 421
Query: 222 tcctcctcctcctgtttgaggta---tttcttgtctgtatagccctggctgtcctggaac 278
||||||| || ||| |||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 422 tcctcctgctgctgcttgaggtagggttt---gtctgtatagccctggctgtcctggaac 478
Query: 279 tcactctgtggagcagtcctcttaactcagagatccatttgtctctgcctcctgagagct 338
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 479 tcactctgtggagcagtcctcttaattcagagatccatttgtctctgcctcctgagagct 538
Query: 339 gagactaaaggcatgtgccacctctgcttggtccacatatagtttttatctgatactttt 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 gagactaaaggcatgtgccacctctgcttggtccacatatagtttttatctgatactttt 598
Query: 399 cagatgtttaagggcaagattccagagggaagtggaaataactggacctactgacatggt 458
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 599 cacatgtttaaggacaagattccagagggaagtggaaataactggacctactgacat--t 656
Query: 459 agtcttctcaatactaccactaca 482
||||||||||||||||||||||||
Sbjct: 657 agtcttctcaatactaccactaca 680
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 880
Length adjustment: 10
Effective length of query: 472
Effective length of database: 870
Effective search space: 410640
Effective search space used: 410640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
