BAC Information

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BAC

Clone NameMSMg01-450G07
Chromosome1 (Build37)
Map Location 106,234,783 - 106,234,942
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC383546, LOC100041134, Cdh20, Rnf152
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450G07.T7 (MSMg01no450_g07.b1)MSMg01-450G07.TJ (MSMg01no450_g07.g1)
ACCAG538134AG538135
length777774
length of high quality
(start - end)
160 (128 - 287)388 (84 - 471)
definitionCHROMAT_FILE: MSMg01no450_g07.b1 PHD_FILE: MSMg01no450_g07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:18 2005CHROMAT_FILE: MSMg01no450_g07.g1 PHD_FILE: MSMg01no450_g07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GATACTTATAATTTGCGGCCGCTAAAAGAATCACAATTTCGCACCGTAGC
GNGGAANNCCGTGATAGCTTAAAACAGAGAAANNNNTCATTATTTACCCA
CTTCTCCACTCCCTAAAGAGTCAATACTTTTACTATTTCCCATAAGAAAT
TCCTTGGACTTTGGTATTCTCCTTTGCTATCTTCCCCCCTTCCATATTTA
CCTCTCTCCACATTATTTTTGAGAGGATAGGATTTTTCACTAAAGTTAGA
ACTTTTTGATGCACTGAGGCTGGTCTGCCAGTGAAATGCAGGTATCCTCT
TTTCTCTAAATCCTTGGTTTCGTAATTACGAGNCCATGGCCATTGAACCC
AACCTTCTACTTGGGTGCTGGGCACCCAAATTCAGGATCTTATACAGCAC
ACACTTTACAGTCATATCCCTACTTCTGACATGTTTTTAAGTTGTCTTTG
TTACCGCTCTTTTTTGCTTTGTTATTTATAATTTTGGATTGTTTTTTCCT
CCTTATTGATTACGCATCCAAACTATCTACTGTGTTATTTTACTTATTTC
CTTTTGTGTCCTCTTTCCCATTTTCCTTTACATCCCATCTTTCTCGCTAT
TCCTCGCATTCTCTATCCTCGCTCTACCCCCCTTCCTCCTTTATCGCCTT
GTTTGCCTAGCATTTTTTCTTTTCTTTTTCATTCTCCCCTTTTTTCATAT
CCTTTTTTTCTCTCCTTTTCTTCATTTCTAATCCCATCTCTTTTATTATT
ATCCACCTGCCCTATTTCTTTTTCCGC
GTGATGCGATGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTATATTAGCCCTC
TATATTATATATGGATATTAGCCCTCTATAGGATTTAGGATTGGTAAAGA
TTCTATTGGATCTTTTCCCATTCTGTTGGTTTCCTTTTTGTCTTATTGAC
AGTGTCCTTTGCCTAACATAAGCTTTGCAATTTTATCAACCTATCTTGCT
GTTAATGATTATCTATAGTTCCTTTAAATCATATTTGAGCAAGCAACCAG
TCCCTACTATGCTGCTTCAGCCAAGTATTTTGACCTACATTAAAAGGCTG
AATAATGATGTCTGGTTCTTTGCCAAAATAAGTCAGTGTCTGCTTTCTTC
CATAGATAATCATATGGGCTACTGCCTCATAATATGGCAGGATATTATGT
TTAGGAGATATACTTGAATGTATCCACATAAGAGGAAGCTTTTGCCACAT
TAATCCTGTACGTTTATGTCTCATGTTAAATATCACCTATTGTATCTCTT
ACTTAATAATACTTATCTTCTACTTTACTGTTTTTCTATAGTTCTTTTCT
ACTTTGTCCTAATGCNCTCCTCTCCTTCTCTAAGTCTAATGCACTGTACT
TCCTGCTTCTAATTCCACCCTCCTTTTTTCAACTACTTTTTCTTATTCCA
ACTCTTCCTCCTCTCTCTGTTTCCATTCTTCTCATCTCACTGTTTCTTTT
TTCCTTCTTTTATCTTCCCTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_g07.b1 MSMg01no450_g07.b1 CHROMAT_FILE:
MSMg01no450_g07.b1 PHD_FILE: MSMg01no450_g07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:18 2005
         (160 letters)



>mm_chr1_106234583_106235142
          Length = 560

 Score =  294 bits (152), Expect = 2e-84
 Identities = 158/160 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttactatttcccataagaaattccttggactttggtattctcctttgctatcttcccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttactatttcccataagaaattccttggactttggtattctcctttgctatcttcccc 260

                                                                       
Query: 61  ccttccatatttacctctctccacattatttttgagaggataggatttttcactaaagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccttccatatttacctctctccacattatttttgagaggataggatttttcactaaagtt 320

                                                   
Query: 121 agaactttttgatgcactgaggctggtctgccagtgaaat 160
           ||||||  ||||||||||||||||||||||||||||||||
Sbjct: 321 agaactccttgatgcactgaggctggtctgccagtgaaat 360


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 160
Length of database: 560
Length adjustment: 8
Effective length of query: 152
Effective length of database: 552
Effective search space:    83904
Effective search space used:    83904
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)