BAC Information

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BAC

Clone NameMSMg01-450J11
Chromosome1 (Build37)
Map Location 106,236,503 - 106,236,782
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC383546, LOC100041134, Cdh20, Rnf152
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450J11.T7 (MSMg01no450_j11.b1)MSMg01-450J11.TJ (MSMg01no450_j11.g1)
ACCAG538283AG538284
length744745
length of high quality
(start - end)
280 (328 - 607)243 (74 - 316)
definitionCHROMAT_FILE: MSMg01no450_j11.b1 PHD_FILE: MSMg01no450_j11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:34 2005CHROMAT_FILE: MSMg01no450_j11.g1 PHD_FILE: MSMg01no450_j11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATCTATAATTTGCGGCCGGAAAAAGAANCANTTTCGTTACCGGATNNGN
GGNAANCCACAATACCTNTACTCAACCACANNNANGAGGGACAANTNACA
TTTTCTAAATAAATTTTTCTCACCTAAAAAAGAATTTTCATTAGTTTTGA
CATCAAATATACTATTGAATGGGAAATGCCCCTCAATAATATTCCAACTA
TAATTACAATTTCAAAGAAATAATTGTCTGTCTACCTGGTACAGATATGT
TTTTCTTTATAATGAAAATTATTTCAAAATAGTATGAAATTTTAGATTTA
AAAAACATTGTAATATTTCTTCTTTGNCTCCCAAGCTTTGGTTCAAGACA
CGTTTGAATTTGCCATCTTGGAGTCTTTCTATTATTTTGCACATTTAACT
CATTCTGTTAGAGGAGATGCTGAACATTCAAAACACACATGTATGGCATA
ATAAAACCTTAAAGCATATATCAGTCACTATCCCATACTACCCATGACGT
GAGAATATTTTCAAATGCATAGGACTCACCATCTGTATATGTTGCTGTTT
CTCAATATTAAGCTTACAGAGTCTGAACGGCAGAACTGCTTCATTGGAGT
AATACCACACATCATAAATGGAAAACTTAGCTTGGCGCGTGGCTTTGTTT
ATTGTTTACACCACGGAACTACCATCCACATGCAGAAAGAGTCTCATTTG
TACTCCCAGCACTTCTTTACATCATTGTGGTCTTCTGAATGGCC
TTTTCGATGAAGTGAGGAGGCTGGNGGCCGCCCGTCAAACAACATGAGGT
GAACTATAGAATGACACACAAAATTCATTGCCTTCAGCTTGTGCAGAAGC
TGCAGTGAACCACTCATGTCCGGAAAACAACTTTTCCTGGCATTCCTTTC
TATATTCTGTCTCTTACCTTCTTTCTTCCCACCCTTCTGTGATGCTTCCA
TAGCCTTGGTGGTGAGGAGTTGATATAGATGTCCCATGTAGGGCTCAGCA
CATTAATTATCAACACTTTAATTATGTATGAGTCCTTGAATTAGTGCTGA
CTATTGCAGAGAGAATTGTCNTGTTCACAGTGGAGGGCAGCCTTGATATA
TGTGCATAAAGGGTAATTTGACATGTTCATTTAACAAGGCAATAGCAGTA
GGTTGTGTCTTCCTACTATTTTCTCTATGTTCCCCCTTTTATTTTTCTGT
GCTCTACAAATAACGTGTGTTGTGTCCTCACAAACTGTGCTGGGTCTTGT
TGTCTAGTTTTTGTGGACCTCTATTATTAATACCCTATGTTGTTGTTTGG
TATTTCTGGCATATCTTGATTAATATTTCCTTATGATATCTTATGCTTGC
CTTCTTTAAACTCTATTTAATAGTTCATGTCCCTCCGGGGTATCTCCTGT
TCTTTTTTTCCGGCATATTTGTTTCCCTTCCCTATTTTTTTTTTTTCTTT
TCTCCTCATTTCTTCGTCTCTTTATGTGTCCCCTTTATTGTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_j11.b1 MSMg01no450_j11.b1 CHROMAT_FILE:
MSMg01no450_j11.b1 PHD_FILE: MSMg01no450_j11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:34 2005
         (280 letters)



>mm_chr1_106236303_106236982
          Length = 680

 Score =  518 bits (268), Expect = e-151
 Identities = 277/280 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcccaagctttggttcaagacacgtttgaatttgccatcttggagtctttctattattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcccaagctttggttcaagacacgtttgaatttgccatcttggagtctttctattattt 260

                                                                       
Query: 61  tgcacatttaactcattctgttagaggagatgctgaacattcaaaacacacatgtatggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcacatttaactcattctgttagaggagatgctgaacattcaaaacacacatgtatggc 320

                                                                       
Query: 121 ataataaaaccttaaagcatatatcagtcactatcccatactacccatgacgtgagaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataataaaaccttaaagcatatatcagtcactatcccatactacccatgacgtgagaata 380

                                                                       
Query: 181 ttttcaaatgcataggactcaccatctgtatatgttgctgtttctcaatattaagcttac 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 381 ttttcaaatgcataggactcaccatctgtatatgctgctgtttctcaatattaagtttac 440

                                                   
Query: 241 agagtctgaacggcagaactgcttcattggagtaatacca 280
           |||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 agagtctgaacggctgaactgcttcattggagtaatacca 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)