Query= MSMg01no450_p21.b1 MSMg01no450_p21.b1 CHROMAT_FILE:
MSMg01no450_p21.b1 PHD_FILE: MSMg01no450_p21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:05 2005
(504 letters)
>mm_chr1_126330649_126331552
Length = 904
Score = 928 bits (480), Expect = 0.0
Identities = 495/500 (99%)
Strand = Plus / Plus
Query: 5 gaattcacaacaatcatcttatgaatggggattatccccatatgaggaaatatattaaaa 64
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 205 gaattcacaacaatcattttatgaatggggattatccccacatgaggaaatatattaaaa 264
Query: 65 ggtcatagcattaaggaggttgagaaccactgacctagttgacctcaacatgcagataga 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 265 ggtcatagcattaaggaggttgagaaccactgacctagttgacctcaacatgcaaataga 324
Query: 125 gccattggactctccaacttaagatacataaagcaatctaataaatctcctgtgcaacct 184
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 325 gccattggactctccaacttaagatacataaaccaatctaataaatctcctgtgcaacct 384
Query: 185 atattcattccagcagttctgtttggctagagagcacagagtgattccgcacatatacaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atattcattccagcagttctgtttggctagagagcacagagtgattccgcacatatacaa 444
Query: 245 aatacctattgtaggcctggaatggagtatttacaagtatagaccattgattcatacaga 304
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aatatctattgtaggcctggaatggagtatttacaagtatagaccattgattcatacaga 504
Query: 305 ggggaaaactctcaattaagaactcatgttatgtttcatgccacacaggtgcactgagac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggggaaaactctcaattaagaactcatgttatgtttcatgccacacaggtgcactgagac 564
Query: 365 tacttgaaacaggcttccttattcaggactagaagaagctctgcattttagcagcttcac 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tacttgaaacaggcttccttattcaggactagaagaagctctgcattttagcagcttcac 624
Query: 425 ttcttttattaatattataaatattgggacaagttctgccaaataaatgtaaagttttgc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttcttttattaatattataaatattgggacaagttctgccaaataaatgtaaagttttgc 684
Query: 485 agtctaggacttgccatgta 504
||||||||||||||||||||
Sbjct: 685 agtctaggacttgccatgta 704
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space: 441636
Effective search space used: 441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no450_p21.g1 MSMg01no450_p21.g1 CHROMAT_FILE:
MSMg01no450_p21.g1 PHD_FILE: MSMg01no450_p21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:05 2005
(442 letters)
>mm_chr1_126530126_126530971
Length = 846
Score = 746 bits (386), Expect = 0.0
Identities = 430/448 (95%), Gaps = 8/448 (1%)
Strand = Plus / Minus
Query: 1 tcttcatccatataatattctcaggcaggtgctattgggccggcttagacacaggcaatg 60
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 646 tcttcatccatataatattctcaggcaggtgctagtgggctggcttagacacaggcaatg 587
Query: 61 gtgcaatagtcgtgtgactcagcttcaaagcccataaagacaagatgagtgaatggttat 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 586 gtgcaatagtcgtgtgactcagattcaaagcccataaagacaagatgagtgaatggttat 527
Query: 121 taaagcaaatttggccttatgaatgtctcaaggtagtatatatttggcccttagaagagc 180
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct: 526 taaagcaaatttggccttataaatgtctcaaggtagtgtatatttggcccttagaagagc 467
Query: 181 aaatggttggcccaatatttgctcatctcgagaatattttattttttctct-ttttttct 239
|||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||
Sbjct: 466 aaatggttggcccaatatttgctcatctcgagaatattttcttttttctttcttttttct 407
Query: 240 ttttt-----taaatttgttttgagctttgtggtctctaggcatataatgtagcttccag 294
||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 tttttcttttta--tttgttttgagctttgtggtctctaggcatataatgtagcttccag 349
Query: 295 tcagcacacaggaccttttccttaaatcattgggaaactttgtccatgaaatatcccagg 354
|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct: 348 tcagcacacaggaccttttccttaaatcataaggaaactttgtccatgaaatagcccagg 289
Query: 355 caattgtcagactctagttagagggggcaacccaaatttattgtaacaacttggcttgag 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 caattgtcagactctagttagagggggcaacccaaatttattgtaacaacttggcttgag 229
Query: 415 ttaactcggcagatttagttttccccag 442
||||||||||||||||||||||||||||
Sbjct: 228 ttaactcggcagatttagttttccccag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 846
Length adjustment: 10
Effective length of query: 432
Effective length of database: 836
Effective search space: 361152
Effective search space used: 361152
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
